JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GGT5_chr22_24214660_24250082	0/0	c0018	1761	1	0	1	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0019	1761	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0020	1761	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0021	1761	1	0	0	1	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0022	1761	1	0	0	0	0	1	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0023	1761	1	0	0	1	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0024	1761	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0025	1761	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0026	1761	1	0	0	0	0	1	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0027	1761	1	0	1	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0028	1761	1	0	0	1	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0029	1761	1	0	0	1	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0030	1761	1	0	1	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0031	1761	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0032	1761	1	0	1	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT6_chr17_4551927_4565577	0/0	c0001	1500	174	30	18	114	5	7	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/1	c0002	1500	158	37	43	47	10	20	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0003	1500	48	1	8	25	1	13	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	1/0	c0004	1500	22	19	2	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0005	1500	10	0	0	10	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0006	1500	9	4	4	0	1	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0007	1500	8	0	1	3	0	4	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0008	1500	4	4	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0009	1500	3	0	3	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0010	1500	2	2	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0011	1500	2	0	2	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0012	1500	2	0	0	2	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0013	1500	2	0	1	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0014	1500	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0015	1500	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0016	1500	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0017	1500	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0018	1500	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0019	1500	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0020	1500	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0021	1500	1	0	0	0	0	1	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0022	1500	1	0	0	0	1	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0023	1510	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0024	1500	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0025	1500	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0026	1500	1	0	0	0	0	1	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	c0027	1500	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT7_chr20_34839720_34877856	1/1	c0001	1989	267	66	47	111	15	26	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0002	1989	60	15	5	29	3	8	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0003	1989	14	10	4	0	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0004	1989	3	3	0	0	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0005	1989	2	0	2	0	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0006	1989	1	1	0	0	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0007	1989	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0008	1989	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856