JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GGT7_chr20_34839720_34877856	0/0	c0009	1989	1	1	0	0	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0010	1989	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0011	1989	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0012	1989	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	c0013	1989	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGTA1_chr9_121450040_121504844	1/1	c0001	303	330	76	61	150	11	30	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	c0002	303	6	2	3	0	1	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	c0003	303	2	0	2	0	0	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTLC1_chr20_23980053_23993779	1/1	c0001	678	395	73	72	194	10	44	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0002	678	13	11	2	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0003	678	12	10	0	1	1	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0004	678	3	1	0	0	2	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0005	678	3	0	3	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0006	678	2	0	2	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0007	678	2	2	0	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0008	678	1	0	0	1	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0009	678	1	0	0	0	1	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0010	678	1	0	1	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0011	678	1	1	0	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0012	678	1	1	0	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	c0013	678	1	1	0	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC2_chr22_22639614_22652898	0/1	c0001	657	178	14	58	89	5	11	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0002	657	60	6	5	31	5	13	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0003	657	56	39	5	9	0	3	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0004	657	45	4	5	27	0	9	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0005	657	17	15	2	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	1/0	c0006	657	13	1	2	0	2	7	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0007	657	6	0	0	6	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0008	657	5	4	0	0	1	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0009	657	3	0	0	3	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0010	657	3	0	0	0	0	3	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0011	657	3	3	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0012	657	2	1	1	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0013	657	2	2	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0014	657	2	0	0	2	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0015	657	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0016	657	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0017	657	1	0	0	0	0	1	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0018	657	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0019	657	1	0	0	0	0	1	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0020	657	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0021	657	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0022	657	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0023	657	1	0	0	0	0	1	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0024	657	1	0	0	0	1	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0025	657	1	0	1	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0026	657	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0027	657	1	0	0	0	0	1	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0028	657	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0029	657	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898