JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GGTLC2_chr22_22639614_22652898	0/0	c0030	657	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	c0031	657	1	0	1	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC3_chr22_18511344_18523161	0/0	c0001	678	26	5	7	13	0	1	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	c0002	678	3	0	0	3	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	c0003	678	2	1	1	0	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	c0004	678	1	1	0	0	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	c0005	678	1	1	0	0	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	c0006	678	1	0	0	0	0	1	copy fasta	GGTLC3	chr22	18511344	18523161
GH1_chr17_63912203_63923839	0/0	c0000	0	1	0	0	1	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	1/1	c0001	654	380	78	77	169	17	37	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0002	654	15	9	1	4	0	1	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0003	654	7	5	2	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0004	654	4	4	0	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0005	654	2	0	0	2	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0006	654	1	1	0	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0007	654	1	0	0	0	1	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0008	654	1	0	0	0	0	1	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0009	654	1	0	1	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0010	654	1	0	1	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0011	654	1	0	1	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0012	654	1	0	1	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0013	654	1	0	0	0	0	1	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0014	654	1	0	0	1	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0015	654	1	1	0	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	c0016	654	1	0	0	1	0	0	copy fasta	GH1	chr17	63912203	63923839
GH2_chr17_63875215_63886944	1/1	c0001	654	423	92	75	191	16	47	copy fasta	GH2	chr17	63875215	63886944
GH2_chr17_63875215_63886944	0/0	c0002	654	1	0	0	0	0	1	copy fasta	GH2	chr17	63875215	63886944
GH2_chr17_63875215_63886944	0/0	c0003	654	1	0	1	0	0	0	copy fasta	GH2	chr17	63875215	63886944
GH2_chr17_63875215_63886944	0/0	c0004	654	1	0	0	1	0	0	copy fasta	GH2	chr17	63875215	63886944
GHDC_chr17_42184087_42199494	1/1	c0001	1593	310	75	51	128	15	39	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0002	1593	36	0	1	30	0	5	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0003	1593	12	11	1	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0004	1593	6	0	5	0	1	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0005	1593	1	0	0	1	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0006	1593	1	0	0	1	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0007	1593	1	1	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0008	1593	1	0	0	1	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0009	1593	1	0	1	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0010	1593	1	1	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0011	1593	1	1	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0012	1593	1	0	1	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0013	1593	1	1	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	c0014	1593	1	0	0	1	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHITM_chr10_84134509_84158568	1/1	c0001	1038	440	89	82	210	18	39	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	c0002	1038	6	6	0	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	c0003	1038	2	2	0	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	c0004	1038	1	0	0	0	0	1	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	c0005	1038	1	1	0	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHRHR_chr7_30958953_30984528	1/1	c0001	1272	305	42	60	152	17	32	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0002	1272	24	16	1	0	0	7	copy fasta	GHRHR	chr7	30958953	30984528