JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GHRHR_chr7_30958953_30984528	0/0	c0003	1272	20	20	0	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0004	1272	20	3	14	0	1	2	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0005	1272	15	10	3	0	0	2	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0006	1272	10	0	0	10	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0007	1272	7	0	0	7	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0008	1272	6	3	3	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0009	1272	4	0	0	4	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0010	1272	2	2	0	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0011	1272	2	2	0	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0012	1272	2	0	0	2	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0013	1272	1	0	0	1	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0014	1272	1	0	1	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0015	1272	1	0	0	1	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0016	1261	1	0	0	1	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	c0017	1272	1	0	0	0	0	1	copy fasta	GHRHR	chr7	30958953	30984528
GHRH_chr20_37246086_37266814	1/1	c0001	327	387	88	69	168	16	44	copy fasta	GHRH	chr20	37246086	37266814
GHRH_chr20_37246086_37266814	0/0	c0002	327	18	7	3	8	0	0	copy fasta	GHRH	chr20	37246086	37266814
GHRH_chr20_37246086_37266814	0/0	c0003	327	3	3	0	0	0	0	copy fasta	GHRH	chr20	37246086	37266814
GHRL_chr3_10280666_10297947	1/1	c0001	354	384	99	57	174	9	43	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	c0002	354	47	0	2	40	2	3	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	c0003	354	29	1	19	4	3	2	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	c0004	354	1	0	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	c0005	354	1	0	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHR_chr5_42418439_42726878	0/1	c0001	1851	64	35	16	0	4	8	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0002	1917	60	21	16	10	4	9	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0003	1917	27	2	9	9	4	3	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0004	1851	19	0	1	15	0	3	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	1/0	c0005	1917	15	13	1	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0006	1917	8	8	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0007	1917	5	0	0	0	0	5	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0008	1851	4	0	2	2	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0009	1851	2	2	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0010	1917	2	2	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0011	1917	2	0	0	2	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0012	1851	1	1	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	c0013	1917	1	0	1	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHSR_chr3_172438291_172453456	1/0	c0001	1101	175	46	27	77	3	21	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0002	1101	129	26	36	47	8	12	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/1	c0003	1101	114	3	14	80	3	13	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0004	1101	13	9	3	0	0	1	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0005	1101	3	0	0	3	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0006	1101	2	1	1	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0007	1101	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0008	1101	1	0	0	1	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0009	1101	1	0	1	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0010	1101	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0011	1101	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0012	1101	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0013	1101	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0014	1101	1	0	0	0	0	1	copy fasta	GHSR	chr3	172438291	172453456