JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GHSR_chr3_172438291_172453456	0/0	c0015	1101	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	c0016	1101	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GID4_chr17_18034408_18073405	1/1	c0001	903	192	47	35	79	5	24	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	c0002	903	112	41	35	20	9	7	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	c0003	903	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	c0004	903	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	c0005	903	1	0	0	0	0	1	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	c0006	903	1	0	0	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID8_chr20_62933147_62953475	1/1	c0001	687	438	98	79	202	14	43	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	c0002	687	3	0	3	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	c0003	687	1	0	0	0	0	1	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	c0004	687	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	c0005	687	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GIGYF1_chr7_100674507_100699250	0/0	c0001	3108	203	55	34	80	9	25	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0002	3108	105	3	16	77	1	8	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	1/1	c0003	3108	43	9	5	10	2	15	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0004	3108	5	5	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0005	3108	4	1	1	0	0	2	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0006	3108	4	0	0	4	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0007	3105	3	0	0	3	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0008	3108	3	3	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0009	3108	3	3	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0010	3108	3	0	3	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0011	3108	2	0	2	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0012	3108	2	2	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0013	3108	2	0	2	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0014	3108	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0015	3108	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0016	3093	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0017	3108	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0018	3108	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0019	3108	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0020	3108	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0021	3108	1	0	1	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0022	3108	1	0	1	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0023	3108	1	0	1	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0024	3108	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0025	3108	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0026	3108	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0027	3108	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0028	3108	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	c0029	3108	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF2_chr2_232692331_232865605	1/0	c0001	3900	117	25	24	46	2	19	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/1	c0002	3897	94	34	24	29	2	4	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0003	3897	54	12	5	31	2	4	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0004	3903	45	1	3	33	2	6	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0005	3897	33	2	8	17	1	5	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0006	3900	6	6	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0007	3903	4	0	0	4	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0008	3900	2	0	0	2	0	0	copy fasta	GIGYF2	chr2	232692331	232865605