JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GIGYF2_chr2_232692331_232865605	0/0	c0009	3879	2	0	1	0	0	1	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0010	3897	2	0	1	0	1	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0011	3885	2	0	2	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0012	3900	2	2	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0013	3897	2	2	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0014	3903	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0015	3876	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0016	3897	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0017	3903	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0018	3897	1	0	1	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0019	3900	1	0	1	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0020	3900	1	0	0	0	0	1	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0021	3897	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0022	3900	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0023	3897	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	c0024	3897	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIMAP1_chr7_150711613_150729284	1/1	c0001	921	387	80	66	192	9	38	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0002	921	26	5	5	6	3	7	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0003	921	5	5	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0004	921	5	5	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0005	921	3	3	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0006	921	3	0	0	3	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0007	921	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0008	921	1	0	0	0	0	1	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0009	921	1	0	0	1	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0010	921	1	0	1	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	c0011	921	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP2_chr7_150680706_150698641	1/1	c0001	1014	175	12	36	100	10	15	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0002	1014	138	37	19	67	2	13	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0003	1014	56	0	8	43	1	4	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0004	1014	55	39	4	4	3	5	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0005	1014	9	0	0	9	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0006	1014	6	5	1	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0007	1014	3	0	0	3	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0008	1014	2	2	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0009	1014	2	0	0	0	0	2	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0010	1014	1	0	0	1	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0011	1014	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0012	1014	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0013	1014	1	0	0	1	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0014	1014	1	0	0	1	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0015	1014	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0016	1014	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0017	1014	1	0	0	1	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0018	1014	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	c0019	1014	1	0	0	0	0	1	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP4_chr7_150562390_150578953	1/0	c0001	990	369	86	58	168	13	43	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	c0002	990	63	6	13	43	0	1	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/1	c0003	990	8	0	4	0	3	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	c0004	990	7	0	0	7	0	0	copy fasta	GIMAP4	chr7	150562390	150578953