JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GIMAP4_chr7_150562390_150578953	0/0	c0005	990	2	0	0	0	0	2	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	c0006	990	1	0	0	1	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	c0007	990	1	0	0	1	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	c0008	990	1	0	1	0	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	c0009	990	1	0	0	1	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	c0010	990	1	0	0	1	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP5_chr7_150732418_150748646	1/1	c0001	924	264	53	46	123	8	32	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	c0002	924	120	20	23	66	4	7	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	c0003	924	23	19	0	3	0	1	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	c0004	924	5	4	1	0	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	c0005	924	4	0	0	0	0	4	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	c0006	924	2	0	0	2	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	c0007	924	1	0	0	1	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	c0008	924	1	0	0	1	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	c0009	924	1	0	0	1	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	c0010	924	1	0	0	1	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP6_chr7_150620375_150637385	1/0	c0001	879	187	32	29	101	1	23	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	c0002	879	135	31	18	63	8	15	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/1	c0003	879	85	7	26	38	7	6	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	c0004	879	17	16	1	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	c0005	879	9	8	1	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	c0006	879	6	0	3	3	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	c0007	879	3	1	2	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	c0008	879	1	0	0	1	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	c0009	879	1	1	0	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	c0010	879	1	0	0	1	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	c0011	879	1	0	0	1	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP7_chr7_150509872_150526073	0/0	c0001	903	156	43	12	90	1	10	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	1/0	c0002	903	96	2	16	59	3	15	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0003	903	76	41	14	1	6	14	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/1	c0004	903	68	2	18	34	6	7	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0005	903	60	3	9	45	0	3	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0006	903	2	2	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0007	903	1	0	1	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0008	903	1	0	1	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0009	903	1	0	0	1	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0010	903	1	0	1	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0011	903	1	1	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0012	903	1	0	0	1	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0013	903	1	0	0	0	0	1	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	c0014	903	1	0	0	1	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP8_chr7_150445630_150484393	1/1	c0001	1998	214	44	43	87	9	29	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0002	1998	87	4	13	61	2	7	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0003	1998	12	11	1	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0004	1998	10	0	0	10	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0005	1998	9	8	1	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0006	1998	5	2	0	0	0	3	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0007	1998	4	3	1	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0008	1998	3	0	2	0	1	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0009	1998	3	3	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393