JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GIMAP8_chr7_150445630_150484393	0/0	c0010	1998	3	3	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0011	1998	3	3	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0012	1998	2	2	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0013	1998	2	0	0	2	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0014	1998	2	2	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0015	1998	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0016	1998	1	0	0	0	0	1	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0017	1998	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0018	2014	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0019	1998	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0020	1998	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0021	1998	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0022	1998	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0023	1998	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0024	1998	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0025	1998	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0026	1998	1	0	1	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	c0027	1998	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMD1_chr4_106352392_106373778	1/1	c0001	654	199	45	39	85	12	16	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	c0002	654	125	12	25	75	2	11	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	c0003	654	84	10	10	47	1	16	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	c0004	654	15	13	2	0	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	c0005	654	10	5	3	0	1	1	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	c0006	654	7	7	0	0	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	c0007	654	6	5	0	1	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	c0008	654	3	0	0	3	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	c0009	654	2	1	1	0	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	c0010	654	1	0	0	1	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIN1_chr5_103081000_103125138	1/0	c0001	1569	196	71	36	67	10	11	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/1	c0002	1569	113	14	17	70	4	7	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	c0003	1569	4	4	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	c0004	1569	3	0	1	0	0	2	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	c0005	1569	3	3	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	c0006	1569	2	2	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	c0007	1569	1	0	0	1	0	0	copy fasta	GIN1	chr5	103081000	103125138
GINM1_chr6_149561375_149596748	1/1	c0001	993	346	72	71	146	13	42	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	c0002	993	15	13	2	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	c0003	993	7	7	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	c0004	993	5	0	0	5	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	c0005	993	3	0	2	0	1	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	c0006	993	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	c0007	993	1	0	1	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	c0008	993	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	c0009	993	1	0	0	1	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINS1_chr20_25402673_25453563	1/1	c0001	591	295	83	49	127	6	28	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	c0002	591	64	11	27	2	10	14	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	c0003	591	1	0	0	1	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS2_chr16_85671198_85693954	1/1	c0001	558	229	26	59	100	11	31	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	c0002	558	183	31	19	108	7	18	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	c0003	558	48	38	4	6	0	0	copy fasta	GINS2	chr16	85671198	85693954