JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GINS2_chr16_85671198_85693954	0/0	c0004	558	3	2	0	1	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	c0005	558	3	0	0	3	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	c0006	558	2	2	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	c0007	558	1	0	0	0	0	1	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	c0008	558	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS3_chr16_58387471_58411147	1/1	c0001	651	432	94	74	198	16	48	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	c0002	651	2	2	0	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS4_chr8_41524261_41550030	1/1	c0001	672	420	90	75	191	17	45	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	c0002	672	3	0	1	0	1	1	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	c0003	672	2	0	0	2	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	c0004	672	1	0	0	1	0	0	copy fasta	GINS4	chr8	41524261	41550030
GIPC1_chr19_14472762_14501127	0/0	c0001	1002	160	6	18	120	7	9	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0002	1002	123	34	19	65	1	4	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	1/1	c0003	1002	115	45	25	11	8	24	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0004	1002	20	4	13	1	2	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0005	1002	6	5	1	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0006	1002	5	0	0	0	0	5	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0007	1002	2	0	0	0	0	2	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0008	1002	1	0	0	0	0	1	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0009	1002	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0010	1002	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0011	1002	1	0	1	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0012	1002	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0013	1002	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0014	1002	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0015	1002	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0016	1002	1	0	0	0	0	1	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0017	1002	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0018	1002	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0019	1002	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	c0020	1002	1	0	1	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC2_chr1_78040966_78143444	1/1	c0001	948	175	60	46	39	9	19	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0002	948	113	18	16	67	5	7	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0003	948	17	0	0	14	0	3	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0004	948	7	6	1	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0005	948	4	0	0	4	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0006	948	4	4	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0007	948	3	0	0	0	0	3	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0008	948	2	0	0	0	0	2	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0009	948	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0010	948	1	0	1	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0011	948	1	1	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0012	948	1	0	0	0	0	1	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0013	948	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0014	948	1	0	0	0	0	1	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	c0015	948	1	1	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC3_chr19_3580478_3598541	1/0	c0001	939	344	40	70	178	12	43	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/1	c0002	939	78	53	8	6	4	6	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	c0003	939	2	0	0	2	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	c0004	939	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541