Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
A2ML1_chr12_8817621_8881787	0/0	c0027	4365	2	2	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0028	4365	2	2	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0029	4365	2	0	2	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0030	4365	2	2	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0031	4365	2	2	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0032	4365	2	0	0	2	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0033	4365	2	0	2	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0034	4365	2	0	0	2	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0035	4365	1	0	0	1	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0036	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0037	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0038	4363	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0039	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0040	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0041	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0042	4365	1	0	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0043	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0044	4365	1	0	0	1	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0045	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0046	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0047	4365	1	0	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0048	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0049	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0050	4365	1	0	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0051	3888	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0052	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0053	4365	1	0	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0054	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0055	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0056	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0057	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0058	4365	1	0	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0059	4365	1	0	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0060	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0061	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0062	4365	1	0	0	1	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0063	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0064	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0065	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0066	4363	1	0	0	0	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0067	4365	1	0	0	1	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0068	4365	1	0	0	0	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0069	4365	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0070	4365	1	0	0	1	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0071	4365	1	0	0	0	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2M_chr12_9062708_9120919	0/1	c0001	4425	214	47	27	108	7	24	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0002	4425	61	15	21	14	2	9	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0003	4425	11	0	4	0	0	7	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0004	4425	8	0	8	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0005	4425	7	7	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919