Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA3_chr16_2270881_2345728	0/0	c0016	5115	1	0	0	0	0	1	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0017	5115	1	0	0	1	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0018	5115	1	0	0	0	0	1	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0019	5115	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0020	5115	1	0	0	1	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0021	5115	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0022	5115	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0023	5115	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0024	5115	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0025	5115	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0026	5115	1	0	1	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0027	5115	1	0	0	1	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	c0028	5115	1	0	0	1	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA4_chr1_93987834_94126148	0/0	c0001	6822	83	5	16	38	5	19	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0002	6822	33	0	11	18	1	3	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0003	6822	18	0	4	13	0	1	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0004	6822	12	5	0	7	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/1	c0005	6822	8	0	4	2	1	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0006	6822	7	7	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0007	6822	7	4	0	3	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0008	6822	6	5	0	0	1	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0009	6822	4	1	3	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0010	6822	4	0	0	4	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0011	6822	3	3	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0012	6822	3	3	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0013	6822	3	1	0	2	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0014	6822	3	0	0	3	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0015	6822	2	2	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0016	6822	2	1	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0017	6822	2	2	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0018	6822	2	2	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0019	6822	2	0	0	0	0	2	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0020	6822	2	2	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0021	6822	2	0	0	0	1	1	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0022	6822	2	0	0	0	1	1	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0023	6822	2	0	0	2	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0024	6822	2	0	0	2	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0025	6822	2	0	0	0	0	2	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0026	6822	2	2	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0027	6822	2	0	0	2	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0028	6822	2	0	2	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0029	6822	2	1	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0030	6822	2	0	0	0	2	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0031	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	1/0	c0032	6822	1	0	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0033	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0034	6822	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0035	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0036	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	c0037	6822	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148