Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AHNAK2_chr14_104932253_104983374	0/0	c0095	16398	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0096	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0097	16893	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0098	16893	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0099	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0100	14913	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0101	14418	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0102	14418	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0103	14913	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0104	14913	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0105	15408	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0106	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0107	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0108	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0109	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0110	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0111	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0112	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0113	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0114	16893	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0115	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0116	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0117	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0118	17388	1	0	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0119	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0120	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0121	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0122	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0123	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0124	17388	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0125	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0126	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0127	17388	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0128	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0129	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0130	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0131	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0132	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0133	17388	1	0	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0134	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0135	17388	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0136	17388	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0137	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0138	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0139	15903	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0140	17388	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0141	16893	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0142	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0143	17883	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0144	17388	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374