JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GIPC3_chr19_3580478_3598541	0/0	c0005	939	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	c0006	939	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	c0007	939	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	c0008	939	1	0	0	0	0	1	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	c0009	939	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPR_chr19_45663221_45688722	1/0	c0001	1401	298	54	67	123	12	41	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/1	c0002	1401	73	9	9	47	4	3	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0003	1401	24	21	3	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0004	1401	5	0	0	5	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0005	1401	3	0	0	3	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0006	1401	2	2	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0007	1401	2	0	0	2	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0008	1401	2	0	0	2	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0009	1401	2	0	0	2	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0010	1401	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0011	1401	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0012	1401	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0013	1401	1	0	1	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	c0014	1401	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIP_chr17_48953554_48973596	1/1	c0001	462	220	86	43	60	8	21	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	c0002	462	182	2	39	114	8	19	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	c0003	462	1	1	0	0	0	0	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	c0004	462	1	1	0	0	0	0	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	c0005	462	1	0	0	1	0	0	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	c0006	462	1	0	0	1	0	0	copy fasta	GIP	chr17	48953554	48973596
GIT1_chr17_29568475_29594648	1/1	c0001	2286	223	78	45	62	9	27	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0002	2286	159	5	33	98	9	14	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0003	2286	5	5	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0004	2286	2	0	0	0	0	2	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0005	2286	2	2	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0006	2286	2	0	0	0	0	2	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0007	2286	2	2	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0008	2286	1	0	1	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0009	2286	1	1	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0010	2286	1	0	0	0	0	1	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0011	2286	1	0	1	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	c0012	2286	1	1	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT2_chr12_109924804_110001368	1/1	c0001	2280	187	65	55	45	7	13	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0002	2280	29	7	0	21	0	1	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0003	2280	8	7	1	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0004	2280	4	3	1	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0005	2280	3	0	0	3	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0006	2280	2	2	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0007	2280	2	2	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0008	2280	1	0	0	0	1	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0009	2280	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0010	2280	1	0	1	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0011	2280	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0012	2280	1	0	0	0	0	1	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	c0013	2280	1	0	0	1	0	0	copy fasta	GIT2	chr12	109924804	110001368