JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GIT2_chr12_109924804_110001368	0/0	c0014	2280	1	0	0	0	0	1	copy fasta	GIT2	chr12	109924804	110001368
GJA10_chr6_89889469_89901120	1/1	c0001	1632	376	85	70	159	18	42	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	c0002	1632	2	2	0	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	c0003	1632	2	0	2	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	c0004	1632	1	0	0	1	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	c0005	1632	1	0	0	0	0	1	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	c0006	1632	1	1	0	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	c0007	1632	1	0	1	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	c0008	1632	1	0	0	0	0	1	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	c0009	1632	1	0	1	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA1_chr6_121430646_121454727	1/1	c0001	1149	400	84	70	189	14	41	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	c0002	1149	13	11	0	0	0	2	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	c0003	1149	1	1	0	0	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	c0004	1149	1	0	0	0	0	1	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	c0005	1149	1	0	0	1	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA3_chr13_20133255_20166052	0/1	c0001	1308	263	50	66	98	13	35	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	c0002	1308	98	20	13	48	5	12	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	1/0	c0003	1308	22	21	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	c0004	1308	3	2	1	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	c0005	1308	2	1	0	0	0	1	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	c0006	1308	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	c0007	1308	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	c0008	1308	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	c0009	1308	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA4_chr1_34787999_34800747	1/0	c0001	1002	125	9	26	66	5	18	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/1	c0002	1002	114	22	6	69	4	12	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0003	1002	99	48	18	27	3	3	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0004	1002	22	9	2	1	4	6	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0005	1002	14	0	11	0	2	1	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0006	1002	14	0	0	14	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0007	1002	8	7	1	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0008	1002	6	0	3	3	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0009	1002	3	0	0	3	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0010	1002	2	2	0	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0011	1002	1	0	0	0	0	1	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0012	1002	1	0	0	1	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0013	1002	1	0	1	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0014	1024	1	0	1	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0015	1002	1	0	0	0	0	1	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0016	1002	1	0	1	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0017	1002	1	1	0	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0018	1002	1	0	0	1	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	c0019	1002	1	0	0	1	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA5_chr1_147751199_147765602	1/1	c0001	1077	435	93	75	205	16	44	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	c0002	1077	13	0	1	12	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	c0003	1077	1	1	0	0	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	c0004	1077	1	0	0	1	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA8_chr1_147897795_147914269	1/1	c0001	1302	440	87	83	206	16	46	copy fasta	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	0/0	c0002	1302	27	5	1	18	0	3	copy fasta	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	0/0	c0003	1302	1	1	0	0	0	0	copy fasta	GJA8	chr1	147897795	147914269