JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GJA8_chr1_147897795_147914269	0/0	c0004	1302	1	0	0	1	0	0	copy fasta	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	0/0	c0005	1302	1	0	0	0	0	1	copy fasta	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	0/0	c0006	1302	1	1	0	0	0	0	copy fasta	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	0/0	c0007	1302	1	0	0	1	0	0	copy fasta	GJA8	chr1	147897795	147914269
GJA9_chr1_38869069_38886587	1/0	c0001	1548	216	51	30	103	7	24	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0002	1548	112	18	23	57	5	9	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0003	1548	35	0	6	25	1	3	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0004	1548	31	1	4	17	4	5	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/1	c0005	1548	21	11	5	0	0	4	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0006	1548	10	10	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0007	1548	7	5	2	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0008	1548	4	0	3	0	0	1	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0009	1548	2	0	0	0	0	2	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0010	1548	1	0	1	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0011	1548	1	0	0	1	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0012	1548	1	1	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0013	1548	1	0	0	0	1	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0014	1548	1	0	0	1	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	c0015	1548	1	1	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJB1_chrX_71218224_71230516	1/1	c0001	852	323	77	62	138	12	32	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	c0002	852	3	3	0	0	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	c0003	853	1	0	0	1	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	c0004	852	1	0	0	1	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB2_chr13_20182470_20197938	1/1	c0001	681	310	99	57	102	18	32	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0002	681	49	0	9	40	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0003	681	29	0	0	28	0	1	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0004	681	10	0	0	10	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0005	681	6	0	0	6	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0006	681	5	0	0	0	0	5	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0007	681	3	0	0	3	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0008	681	1	0	0	0	0	1	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0009	681	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0010	681	1	1	0	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0011	677	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0012	681	1	0	1	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0013	681	1	0	0	0	0	1	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0014	681	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	c0015	681	1	0	1	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB3_chr1_34776214_34791364	1/1	c0001	813	349	58	66	182	10	31	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0002	813	42	10	2	19	3	8	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0003	813	22	9	2	1	4	6	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0004	813	8	7	1	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0005	813	5	1	3	0	1	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0006	813	4	0	0	4	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0007	813	4	4	0	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0008	813	3	3	0	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0009	813	2	0	0	2	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0010	813	2	2	0	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0011	813	2	0	0	2	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	c0012	813	1	0	0	0	0	1	copy fasta	GJB3	chr1	34776214	34791364