JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GJB4_chr1_34754740_34767327	1/1	c0001	801	323	49	55	156	17	44	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0002	801	67	28	9	29	0	1	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0003	801	21	1	1	16	1	2	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0004	801	12	3	6	3	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0005	801	8	8	0	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0006	800	6	5	1	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0007	801	3	0	0	3	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0008	800	2	2	0	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0009	800	2	2	0	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0010	801	2	0	0	2	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0011	801	2	0	0	2	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0012	801	2	0	2	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0013	801	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0014	801	1	0	1	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0015	801	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0016	801	1	0	1	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0017	801	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0018	801	1	1	0	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0019	801	1	1	0	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0020	801	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0021	801	1	0	1	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0022	801	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0023	801	1	0	1	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	c0024	801	1	0	0	0	0	1	copy fasta	GJB4	chr1	34754740	34767327
GJB5_chr1_34750047_34763512	1/1	c0001	822	349	41	60	203	10	33	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0002	822	102	46	13	25	6	12	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0003	822	4	4	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0004	822	4	4	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0005	822	2	2	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0006	822	1	0	1	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0007	822	1	0	0	1	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0008	822	1	0	0	0	0	1	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0009	822	1	1	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0010	822	1	0	0	1	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0011	822	1	0	0	1	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	c0012	822	1	0	0	1	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB6_chr13_20216962_20237319	1/1	c0001	786	457	99	82	210	16	48	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	c0002	786	1	0	0	1	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	c0003	786	1	1	0	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	c0004	786	1	0	0	1	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB7_chr6_87277980_87334278	0/1	c0001	672	226	53	38	104	7	23	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	1/0	c0002	672	110	12	20	55	7	15	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	c0003	672	21	16	4	0	0	1	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	c0004	672	14	0	5	5	2	2	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	c0005	672	3	3	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	c0006	672	2	0	0	2	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	c0007	672	2	1	1	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	c0008	672	2	2	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	c0009	672	1	0	0	0	0	1	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	c0010	672	1	1	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278