JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GJC1_chr17_44793448_44835287	1/1	c0001	1191	365	81	66	166	10	40	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	c0002	1191	15	13	2	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC2_chr1_228144930_228164826	1/1	c0001	1320	343	75	65	149	16	36	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0002	1320	34	5	4	22	0	3	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0003	1321	7	0	3	3	0	1	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0004	1320	7	7	0	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0005	1320	5	0	0	5	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0006	1320	4	4	0	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0007	1320	4	4	0	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0008	1320	3	0	0	0	0	3	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0009	1320	2	0	0	2	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0010	1320	2	0	1	0	0	1	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0011	1321	1	0	0	1	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0012	1320	1	0	1	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	c0013	1320	1	1	0	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC3_chr7_99918266_99934620	1/1	c0001	840	378	88	66	160	17	45	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	c0002	840	5	5	0	0	0	0	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	c0003	840	4	0	3	0	1	0	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	c0004	840	2	0	0	2	0	0	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	c0005	840	1	0	0	0	0	1	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	c0006	840	1	1	0	0	0	0	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	c0007	840	1	0	1	0	0	0	copy fasta	GJC3	chr7	99918266	99934620
GJD2_chr15_34746032_34759998	1/0	c0001	966	198	39	33	102	7	16	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	c0002	966	141	28	19	76	5	13	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/1	c0003	966	67	21	14	19	2	10	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	c0004	966	22	4	4	12	0	2	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	c0005	966	12	1	6	0	4	1	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	c0006	966	3	3	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	c0007	966	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	c0008	966	1	0	0	1	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	c0009	966	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD3_chr17_40355652_40369737	0/1	c0001	885	285	76	50	114	13	31	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	1/0	c0002	885	77	4	27	30	4	11	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	c0003	885	2	0	1	0	1	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	c0004	885	1	0	0	1	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	c0005	885	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	c0006	885	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	c0007	885	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	c0008	885	1	0	0	1	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	c0009	885	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD4_chr10_35600341_35613935	1/1	c0001	1113	284	79	50	120	9	24	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0002	1113	124	2	19	78	6	19	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0003	1113	6	2	2	0	1	1	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0004	1113	5	5	0	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0005	1114	3	0	1	2	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0006	1113	3	2	1	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0007	1113	2	0	1	0	1	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0008	1113	2	2	0	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0009	1113	1	0	0	0	1	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0010	1114	1	0	0	1	0	0	copy fasta	GJD4	chr10	35600341	35613935