JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GJD4_chr10_35600341_35613935	0/0	c0011	1113	1	0	1	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0012	1113	1	0	0	1	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0013	1113	1	0	0	0	0	1	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0014	1113	1	0	0	1	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0015	1113	1	0	1	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0016	1113	1	1	0	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0017	1113	1	1	0	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0018	1113	1	0	0	1	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	c0019	1113	1	0	0	0	0	1	copy fasta	GJD4	chr10	35600341	35613935
GJE1_chr6_142127925_142140358	1/0	c0001	618	282	61	57	135	8	20	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0002	618	55	1	6	36	4	8	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0003	618	49	23	9	3	4	10	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0004	618	4	4	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0005	618	4	0	4	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0006	618	3	3	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0007	618	1	0	0	1	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0008	618	1	1	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0009	618	1	1	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0010	618	1	0	0	0	0	1	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0011	618	1	0	0	1	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	c0012	618	1	0	0	0	0	1	copy fasta	GJE1	chr6	142127925	142140358
GK2_chr4_79401361_79413228	1/1	c0001	1662	248	72	50	89	13	22	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	c0002	1662	146	17	20	88	3	18	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	c0003	1662	5	5	0	0	0	0	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	c0004	1662	1	1	0	0	0	0	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	c0005	1662	1	1	0	0	0	0	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	c0006	1662	1	0	0	1	0	0	copy fasta	GK2	chr4	79401361	79413228
GK3_chr4_165272807_165284704	1/1	c0001	1662	203	14	42	110	6	29	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0002	1662	42	31	0	11	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0003	1662	37	11	16	0	4	6	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0004	1662	36	16	2	18	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0005	1662	30	5	3	19	2	1	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0006	1662	9	9	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0007	1662	4	4	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0008	1662	3	2	0	0	0	1	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0009	1662	2	2	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0010	1662	2	2	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0011	1662	2	1	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0012	1662	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0013	1662	1	0	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0014	1662	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0015	1662	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0016	1662	1	0	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0017	1662	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0018	1662	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0019	1662	1	0	0	0	0	1	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0020	1662	1	1	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0021	1662	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0022	1662	1	0	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0023	1662	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704