JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GK3_chr4_165272807_165284704	0/0	c0024	1662	1	0	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	c0025	1676	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK5_chr3_142152527_142230585	1/1	c0001	1590	257	80	60	70	14	31	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	c0002	1590	12	6	0	3	0	3	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	c0003	1590	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	c0004	1590	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	c0005	1590	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GKAP1_chr9_83734425_83822769	1/1	c0001	1101	335	80	50	145	16	42	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	0/0	c0002	1101	1	0	0	1	0	0	copy fasta	GKAP1	chr9	83734425	83822769
GKN1_chr2_68969636_68985976	1/1	c0001	558	327	61	65	155	14	30	copy fasta	GKN1	chr2	68969636	68985976
GKN1_chr2_68969636_68985976	0/0	c0002	558	67	5	7	47	1	7	copy fasta	GKN1	chr2	68969636	68985976
GKN1_chr2_68969636_68985976	0/0	c0003	558	67	34	6	22	1	4	copy fasta	GKN1	chr2	68969636	68985976
GKN1_chr2_68969636_68985976	0/0	c0004	558	2	0	0	2	0	0	copy fasta	GKN1	chr2	68969636	68985976
GKN1_chr2_68969636_68985976	0/0	c0005	558	1	0	0	0	0	1	copy fasta	GKN1	chr2	68969636	68985976
GKN2_chr2_68940232_68957893	1/1	c0001	555	287	41	56	143	14	31	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	c0002	555	134	29	10	79	2	14	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	c0003	555	20	19	1	0	0	0	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	c0004	555	8	0	0	8	0	0	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	c0005	555	6	6	0	0	0	0	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	c0006	555	4	1	0	0	0	3	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	c0007	555	4	4	0	0	0	0	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	c0008	555	2	0	0	2	0	0	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	c0009	555	1	0	1	0	0	0	copy fasta	GKN2	chr2	68940232	68957893
GK_chrX_30648423_30736462	1/1	c0001	1680	279	69	51	118	11	28	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	c0002	1680	4	0	4	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	c0003	1680	2	2	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	c0004	1680	1	1	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GLA_chrX_101392803_101412925	1/1	c0001	1290	315	78	51	142	11	31	copy fasta	GLA	chrX	101392803	101412925
GLA_chrX_101392803_101412925	0/0	c0002	1290	1	0	0	1	0	0	copy fasta	GLA	chrX	101392803	101412925
GLA_chrX_101392803_101412925	0/0	c0003	1290	1	0	0	1	0	0	copy fasta	GLA	chrX	101392803	101412925
GLA_chrX_101392803_101412925	0/0	c0004	1290	1	0	0	0	0	1	copy fasta	GLA	chrX	101392803	101412925
GLB1L2_chr11_134326988_134381324	1/0	c0001	1911	180	43	45	69	6	16	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0002	1911	74	0	3	58	4	9	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0003	1911	34	14	7	1	3	9	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0004	1911	26	5	1	18	1	1	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0005	1911	26	3	2	19	0	2	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0006	1911	10	8	2	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0007	1911	10	2	2	2	2	2	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0008	1911	5	0	5	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0009	1911	4	3	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0010	1911	3	2	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0011	1911	3	3	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0012	1911	3	2	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0013	1911	3	1	1	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0014	1911	2	0	0	2	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0015	1911	2	2	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0016	1911	2	0	0	2	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0017	1911	2	0	0	0	0	2	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0018	1911	2	1	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0019	1911	2	2	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324