JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLB1L2_chr11_134326988_134381324	0/1	c0020	1911	1	0	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0021	1911	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0022	1911	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0023	1911	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0024	1911	1	0	0	0	1	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0025	1911	1	0	0	0	0	1	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0026	1911	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0027	1911	1	0	0	0	0	1	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0028	1911	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0029	1911	1	0	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0030	1911	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0031	1911	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0032	1911	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0033	1911	1	0	0	0	0	1	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0034	1911	1	0	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0035	1929	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0036	1911	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0037	1911	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0038	1911	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0039	1911	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	c0040	1911	1	0	0	0	1	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L3_chr11_134271379_134324564	0/0	c0001	1962	135	45	32	43	8	7	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0002	1962	117	27	21	46	7	16	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0003	1962	71	2	10	49	2	8	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0004	1962	54	1	7	36	0	10	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0005	1962	12	8	2	2	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0006	1962	7	1	0	6	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0007	1962	7	7	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	1/0	c0008	1962	4	0	0	2	1	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0009	1962	2	0	2	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0010	1962	2	2	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/1	c0011	1962	1	0	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0012	1962	1	0	1	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0013	1962	1	0	0	1	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0014	1962	1	1	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0015	1962	1	0	0	1	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0016	1962	1	0	1	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0017	1962	1	1	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0018	1962	1	1	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0019	1962	1	1	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0020	1962	1	1	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	c0021	1962	1	0	0	0	0	1	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L_chr2_219231598_219250444	1/1	c0001	1965	396	87	83	162	18	44	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	c0002	1965	4	0	0	4	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	c0003	1965	3	0	0	0	0	3	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	c0004	1965	2	0	1	0	0	1	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	c0005	1965	2	2	0	0	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	c0006	1965	2	0	0	2	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	c0007	1965	1	1	0	0	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1_chr3_32991617_33102146	0/0	c0001	2034	188	56	28	82	4	18	copy fasta	GLB1	chr3	32991617	33102146