JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLB1_chr3_32991617_33102146	0/1	c0002	2034	77	2	27	23	5	19	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0003	2034	47	0	0	46	0	1	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0004	2034	22	20	2	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0005	2034	19	8	4	0	5	2	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0006	2034	12	0	0	12	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0007	2034	10	2	6	0	0	2	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	1/0	c0008	2034	4	3	0	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0009	2034	3	0	0	3	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0010	2034	3	0	0	3	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0011	2034	2	2	0	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0012	2034	1	1	0	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0013	2034	1	0	0	0	0	1	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0014	2034	1	0	0	1	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0015	2034	1	0	0	0	0	1	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0016	2034	1	0	0	1	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0017	2034	1	0	0	1	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	c0018	2034	1	0	1	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLCCI1_chr7_7963796_8094080	0/0	c0001	1644	278	60	49	134	5	30	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	1/1	c0002	1644	108	13	16	58	6	13	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	c0003	1647	17	16	1	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	c0004	1644	9	0	5	0	3	1	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	c0005	1644	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	c0006	1644	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	c0007	1644	1	0	1	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	c0008	1644	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCE_chr15_69155635_69277207	0/1	c0001	1854	193	24	22	118	5	23	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	1/0	c0002	1854	111	44	15	42	3	6	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	c0003	1854	15	15	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	c0004	1854	10	0	2	7	0	1	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	c0005	1854	6	6	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	c0006	1854	2	2	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	c0007	1854	2	0	0	0	2	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	c0008	1854	1	1	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	c0009	1854	1	0	0	1	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	c0010	1854	1	0	1	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLDC_chr9_6527467_6650729	1/0	c0001	3063	172	32	22	98	7	12	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0002	3063	38	6	7	20	2	3	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0003	3063	30	3	4	15	4	4	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/1	c0004	3063	17	3	8	1	1	3	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0005	3063	15	14	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0006	3063	11	9	2	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0007	3063	5	4	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0008	3063	5	0	4	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0009	3063	5	4	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0010	3063	4	3	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0011	3063	4	0	4	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0012	3063	3	3	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0013	3063	3	3	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0014	3063	2	0	2	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0015	3063	2	0	2	0	0	0	copy fasta	GLDC	chr9	6527467	6650729