JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLDC_chr9_6527467_6650729	0/0	c0016	3063	2	0	0	2	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0017	3063	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0018	3063	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0019	3063	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0020	3063	1	0	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0021	3063	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0022	3063	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0023	3063	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0024	3063	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0025	3063	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0026	3063	1	0	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0027	3063	1	0	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0028	3063	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0029	2695	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0030	3063	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0031	3063	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0032	3063	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0033	3063	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0034	3063	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0035	3063	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0036	3063	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0037	3063	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0038	3063	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0039	3063	1	0	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	c0040	3063	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDN_chr15_51336655_51413000	1/1	c0001	1656	191	53	51	53	6	26	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0002	1656	138	16	13	90	7	12	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0003	1656	21	0	1	20	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0004	1656	15	0	1	13	0	1	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0005	1656	13	12	1	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0006	1656	10	10	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0007	1656	5	0	3	2	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0008	1656	5	0	1	4	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0009	1656	2	0	2	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0010	1656	2	0	0	0	0	2	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0011	1656	2	0	1	0	0	1	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0012	1656	2	0	0	2	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0013	1656	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0014	1656	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0015	1656	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0016	1656	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0017	1656	1	0	0	0	1	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	c0018	1656	1	1	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLE1_chr9_128499719_128547288	1/1	c0001	2097	191	49	37	76	6	21	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	c0002	2097	162	32	21	90	4	15	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	c0003	2097	2	0	0	2	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	c0004	2097	1	1	0	0	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	c0005	2097	1	0	1	0	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	c0006	2097	1	0	0	1	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	c0007	2097	1	0	0	1	0	0	copy fasta	GLE1	chr9	128499719	128547288