Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
AHNAK2_chr14_104932253_104983374	0/0	c0145	17388	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0146	17388	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0147	17388	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0148	17388	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0149	17388	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0150	19368	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0151	17388	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0152	17388	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0153	17388	1	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0154	17388	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0155	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0156	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0157	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0158	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0159	17883	1	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0160	17883	1	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0161	17883	1	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0162	17883	1	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0163	18378	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0164	17388	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0165	16398	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0166	16893	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0167	17388	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0168	17388	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0169	17388	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0170	17883	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0171	16893	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0172	17883	1	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0173	17388	1	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0174	17883	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0175	17883	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0176	17883	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0177	18378	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0178	17388	1	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0179	17388	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0180	17388	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0181	17883	1	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0182	17883	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0183	17883	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0184	17388	1	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0185	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0186	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0187	17883	1	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0188	16893	1	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0189	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0190	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0191	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0192	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0193	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0194	17883	1	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374