JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLE1_chr9_128499719_128547288	0/0	c0008	2097	1	0	1	0	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLG1_chr16_74442440_74612114	0/0	c0001	3540	195	31	31	102	5	26	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	c0002	3540	59	9	14	31	1	4	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	1/1	c0003	3540	44	23	10	3	1	5	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	c0004	3540	33	15	10	0	5	3	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	c0005	3540	3	0	1	0	0	2	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	c0006	3540	2	0	0	2	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	c0007	3540	2	0	0	2	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	c0008	3540	1	0	1	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	c0009	3540	1	0	1	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	c0010	3540	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	c0011	3540	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLI1_chr12_57454785_57477268	1/0	c0001	3321	167	25	33	85	4	19	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/1	c0002	3321	150	17	30	85	5	12	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0003	3321	37	33	3	0	0	1	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0004	3321	18	15	2	0	0	1	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0005	3321	16	0	0	15	0	1	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0006	3321	4	4	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0007	3321	2	0	0	0	0	2	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0008	3321	2	2	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0009	3321	1	0	1	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0010	3321	1	0	0	0	0	1	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0011	3321	1	1	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0012	3321	1	1	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0013	3321	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0014	3321	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0015	3321	1	0	1	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0016	3321	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0017	3321	1	1	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0018	3321	1	0	1	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0019	3321	1	1	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0020	3321	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0021	3321	1	0	1	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0022	3350	1	0	0	0	1	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0023	3321	1	0	0	0	0	1	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0024	3321	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0025	3321	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	c0026	3321	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI2_chr2_120730868_120997653	0/0	c0001	4710	47	7	13	12	5	10	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0002	4710	46	13	9	15	3	6	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0003	4710	11	10	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0004	4710	11	10	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0005	4710	6	6	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0006	4710	5	4	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0007	4710	3	3	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0008	4710	3	1	2	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0009	4710	2	0	2	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0010	4710	2	2	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0011	4710	2	0	1	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0012	4710	2	2	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653