JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLI2_chr2_120730868_120997653	0/0	c0013	4710	2	2	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0014	4710	1	0	0	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0015	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0016	4710	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0017	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0018	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0019	4710	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0020	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0021	4710	1	0	0	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0022	4710	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0023	4710	1	0	0	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0024	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0025	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0026	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0027	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0028	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0029	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0030	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	c0031	4710	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI3_chr7_41955949_42242209	0/0	c0001	4743	75	52	8	7	3	5	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0002	4743	23	7	1	10	0	5	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0003	4743	20	1	11	5	2	1	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	1/1	c0004	4743	14	5	3	2	0	2	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0005	4743	4	4	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0006	4743	3	3	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0007	4743	3	0	1	0	2	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0008	4743	2	2	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0009	4743	2	2	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0010	4743	1	0	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0011	4743	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0012	4743	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0013	4743	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0014	4743	1	0	0	0	0	1	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0015	4743	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0016	4743	1	0	0	0	0	1	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0017	4743	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0018	4743	1	0	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0019	4743	1	0	0	0	1	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0020	4743	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	c0021	4743	1	0	0	0	0	1	copy fasta	GLI3	chr7	41955949	42242209
GLI4_chr8_143262445_143281931	0/1	c0001	1131	164	7	49	79	6	22	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0002	1131	90	36	11	25	5	13	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	1/0	c0003	1131	81	19	9	45	2	5	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0004	1131	23	23	0	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0005	1131	11	11	0	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0006	1131	7	0	0	7	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0007	1131	6	0	3	0	1	2	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0008	1131	3	1	2	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0009	1131	2	0	0	2	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0010	1131	2	0	0	2	0	0	copy fasta	GLI4	chr8	143262445	143281931