JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLI4_chr8_143262445_143281931	0/0	c0011	1131	1	0	1	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0012	1131	1	1	0	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0013	1131	1	0	0	1	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0014	1131	1	0	0	1	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	c0015	1178	1	0	1	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLIPR1L1_chr12_75329670_75375560	1/1	c0001	729	322	77	61	127	14	41	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	c0002	729	38	0	0	37	0	1	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	c0003	729	7	7	0	0	0	0	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	c0004	729	2	1	1	0	0	0	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	c0005	729	1	1	0	0	0	0	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L2_chr12_75386089_75437688	1/0	c0001	1035	144	41	24	53	6	19	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/1	c0002	1035	113	20	20	59	4	9	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	c0003	1035	74	18	14	28	2	12	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	c0004	1035	21	3	2	16	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	c0005	1035	3	3	0	0	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	c0006	1035	2	0	0	0	0	2	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	c0007	1035	1	0	0	1	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	c0008	1035	1	1	0	0	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	c0009	1035	1	0	0	1	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1_chr12_75475755_75508863	1/1	c0001	801	347	87	59	154	16	29	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	c0002	801	7	0	3	0	0	4	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	c0003	801	2	2	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	c0004	801	2	0	0	2	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	c0005	801	1	0	0	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	c0006	801	1	0	0	0	0	1	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	c0007	801	1	0	0	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	c0008	801	1	1	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR2_chr9_36131733_36168906	1/1	c0001	465	389	60	78	187	16	46	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	c0002	465	19	17	2	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	c0003	465	5	5	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	c0004	465	3	3	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	c0005	465	2	2	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	c0006	465	1	1	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	c0007	465	1	0	0	1	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIS1_chr1_53501239_53744164	0/1	c0001	2388	54	12	13	13	5	10	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	1/0	c0002	2388	31	8	4	18	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0003	2388	24	3	3	11	2	5	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0004	2388	16	13	3	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0005	2388	15	0	4	11	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0006	2388	13	0	1	11	0	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0007	2388	9	9	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0008	2388	7	6	0	0	0	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0009	2388	7	2	0	3	1	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0010	2388	6	0	1	3	1	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0011	2388	5	4	1	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0012	2388	5	5	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0013	2388	3	0	0	3	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0014	2388	2	2	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0015	2388	2	2	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0016	2388	2	2	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164