JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLIS1_chr1_53501239_53744164	0/0	c0017	2388	2	2	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0018	2388	2	0	0	2	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0019	2388	2	0	2	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0020	2388	2	1	1	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0021	2388	2	0	0	0	1	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0022	2388	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0023	2388	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0024	2388	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0025	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0026	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0027	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0028	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0029	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0030	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0031	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0032	2388	1	0	1	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0033	2388	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0034	2388	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0035	2388	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0036	2388	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0037	2388	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0038	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0039	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0040	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0041	2388	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0042	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0043	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0044	2388	1	0	0	0	0	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0045	2388	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	c0046	2388	1	0	0	0	0	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS2_chr16_4311067_4344595	0/0	c0001	1575	247	25	61	110	10	41	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/1	c0002	1575	86	44	11	23	3	4	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0003	1575	19	15	2	0	2	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0004	1575	9	0	0	9	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0005	1575	8	0	0	8	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0006	1575	5	5	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0007	1575	2	2	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0008	1575	2	0	0	2	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0009	1575	2	0	0	2	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0010	1575	2	0	0	2	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0011	1575	2	0	0	0	1	1	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0012	1575	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0013	1575	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0014	1575	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0015	1575	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0016	1575	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0017	1575	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0018	1575	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0019	1575	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0020	1575	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595