JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLIS2_chr16_4311067_4344595	0/0	c0021	1575	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	c0022	1575	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS3_chr9_3819127_4305068	0/0	c0001	2793	97	28	25	31	3	10	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0002	2793	52	24	11	12	0	5	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0003	2793	3	0	0	1	1	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0004	2793	3	2	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0005	2793	3	2	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0006	2793	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0007	2793	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0008	2793	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0009	2793	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0010	2793	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0011	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0012	2793	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0013	2793	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0014	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0015	2793	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0016	2793	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0017	2793	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0018	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0019	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0020	2793	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0021	2793	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0022	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0023	2793	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0024	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0025	2793	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0026	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0027	2793	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0028	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0029	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0030	2793	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	c0031	2793	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLMN_chr1_92241402_92303987	1/1	c0001	1785	185	68	48	32	10	25	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	c0002	1785	9	9	0	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	c0003	1785	1	0	0	0	0	1	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	c0004	1785	1	1	0	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	c0005	1785	1	0	1	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	c0006	1785	1	1	0	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	c0007	1785	1	0	1	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	c0008	1785	1	1	0	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMP_chr1_156287688_156300679	1/0	c0001	1221	281	78	44	130	7	21	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	c0002	1221	80	5	12	44	6	13	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/1	c0003	1221	17	0	4	8	3	1	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	c0004	1221	11	0	11	0	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	c0005	1221	2	1	1	0	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	c0006	1221	1	0	0	1	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	c0007	1221	1	0	0	1	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	c0008	1221	1	1	0	0	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	c0009	1221	1	1	0	0	0	0	copy fasta	GLMP	chr1	156287688	156300679