JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLMP_chr1_156287688_156300679	0/0	c0010	1221	1	0	0	0	0	1	copy fasta	GLMP	chr1	156287688	156300679
GLO1_chr6_38670925_38708145	1/0	c0001	555	230	39	35	124	7	24	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/1	c0002	555	95	25	31	19	8	11	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	c0003	555	85	30	10	35	1	9	copy fasta	GLO1	chr6	38670925	38708145
GLOD4_chr17_754330_787280	1/1	c0001	897	394	92	71	171	15	43	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	c0002	897	12	0	2	9	0	1	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	c0003	897	5	0	0	5	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	c0004	897	2	0	1	0	1	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	c0005	897	2	0	0	0	2	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	c0006	897	1	0	0	1	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	c0007	897	1	0	0	0	0	1	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	c0008	897	1	0	0	0	0	1	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	c0009	897	1	0	0	1	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	c0010	897	1	0	0	1	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD5_chrX_48756747_48778648	1/1	c0001	483	252	66	47	107	8	22	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	c0002	483	11	10	1	0	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	c0003	482	1	0	0	1	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	c0004	484	1	0	0	1	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	c0005	483	1	0	0	1	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	c0006	483	1	0	0	1	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	c0007	483	1	0	0	0	1	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	c0008	484	1	0	0	1	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLP1R_chr6_39043781_39096303	0/0	c0001	1392	137	29	27	60	4	17	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0002	1392	48	3	1	34	2	8	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0003	1392	36	1	6	25	2	2	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0004	1392	33	18	11	0	0	4	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0005	1392	32	0	3	29	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0006	1392	23	2	3	13	1	4	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0007	1392	18	0	9	0	2	7	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0008	1392	17	12	0	3	0	2	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0009	1392	13	0	8	1	3	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0010	1392	11	0	1	10	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0011	1392	10	5	1	4	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0012	1392	7	5	0	2	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0013	1392	6	5	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0014	1392	5	0	0	5	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0015	1392	5	5	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0016	1392	4	4	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/1	c0017	1392	4	3	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0018	1392	4	0	1	3	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0019	1392	3	3	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0020	1392	2	0	0	1	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	1/0	c0021	1392	2	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0022	1392	2	0	1	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0023	1392	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0024	1392	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0025	1392	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0026	1392	1	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0027	1392	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0028	1392	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303