JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLP1R_chr6_39043781_39096303	0/0	c0029	1392	1	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0030	1392	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0031	1392	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0032	1392	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0033	1392	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0034	1392	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0035	1392	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0036	1392	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0037	1392	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	c0038	1392	1	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP2R_chr17_9820924_9897099	1/1	c0001	1662	303	61	61	132	13	34	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0002	1662	24	1	16	0	3	4	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0003	1662	13	0	1	9	0	3	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0004	1662	10	10	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0005	1662	6	6	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0006	1662	3	3	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0007	1662	2	2	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0008	1662	2	2	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0009	1662	2	2	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0010	1662	2	2	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0011	1662	2	2	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0012	1662	1	0	0	1	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0013	1662	1	0	1	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0014	1662	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0015	1662	1	0	0	0	0	1	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0016	1662	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0017	1662	1	0	1	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0018	1662	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0019	1662	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0020	1662	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0021	1662	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	c0022	1662	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLRA1_chr5_151817513_151929851	1/1	c0001	1350	257	69	47	101	12	26	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	c0002	1350	14	12	2	0	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	c0003	1350	4	3	1	0	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	c0004	1350	3	2	1	0	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	c0005	1350	2	2	0	0	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	c0006	1350	1	0	0	1	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	c0007	1350	1	1	0	0	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	c0008	1350	1	1	0	0	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	c0009	1350	1	0	1	0	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA2_chrX_14524536_14736812	1/1	c0001	1359	182	42	33	79	7	19	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	c0002	1359	37	18	11	1	4	3	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	c0003	1359	8	7	1	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	c0004	1359	2	1	1	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	c0005	1359	2	1	1	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	c0006	1359	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA3_chr4_174631920_174834247	0/0	c0001	1395	125	39	23	46	4	13	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	c0002	1395	49	12	11	13	4	9	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/1	c0003	1395	45	22	15	0	1	6	copy fasta	GLRA3	chr4	174631920	174834247