JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLRA3_chr4_174631920_174834247	0/0	c0004	1395	43	2	12	25	0	4	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	c0005	1395	16	3	3	8	0	2	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	c0006	1395	6	6	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	c0007	1395	5	5	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	1/0	c0008	1395	2	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	c0009	1395	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	c0010	1395	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	c0011	1395	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	c0012	1395	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	c0013	1395	1	0	0	0	1	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRB_chr4_157071150_157177090	0/1	c0001	1494	279	76	46	130	3	23	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	c0002	1494	14	7	0	4	1	2	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	1/0	c0003	1494	7	6	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	c0004	1494	1	0	0	0	0	1	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	c0005	1494	1	0	0	0	0	1	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	c0006	1494	1	0	0	1	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	c0007	1494	1	0	0	1	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	c0008	1494	1	1	0	0	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	c0009	1494	1	0	0	0	0	1	copy fasta	GLRB	chr4	157071150	157177090
GLRX2_chr1_193091470_193110414	1/1	c0001	495	377	83	56	177	17	42	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	c0002	495	3	3	0	0	0	0	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	c0003	495	2	2	0	0	0	0	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	c0004	495	2	0	0	0	0	2	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	c0005	495	1	0	0	0	1	0	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	c0006	495	1	0	0	1	0	0	copy fasta	GLRX2	chr1	193091470	193110414
GLRX3_chr10_130131391_130184672	1/1	c0001	1008	360	80	69	171	11	27	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	c0002	1008	55	12	8	23	3	9	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	c0003	1008	4	1	1	0	0	2	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	c0004	1008	2	0	0	0	2	0	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	c0005	1008	2	0	0	0	0	2	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	c0006	1008	1	1	0	0	0	0	copy fasta	GLRX3	chr10	130131391	130184672
GLRX5_chr14_95530050_95549714	1/0	c0001	474	423	92	68	204	13	45	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/1	c0002	474	31	4	11	9	3	3	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	c0003	474	2	2	0	0	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	c0004	474	1	0	0	1	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	c0005	474	1	0	0	1	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	c0006	474	1	0	0	1	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	c0007	474	1	0	1	0	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX_chr5_95808849_95827726	1/1	c0001	321	309	66	59	139	12	31	copy fasta	GLRX	chr5	95808849	95827726
GLRX_chr5_95808849_95827726	0/0	c0002	321	111	32	21	37	6	15	copy fasta	GLRX	chr5	95808849	95827726
GLS2_chr12_56465952_56493161	1/1	c0001	1809	284	67	51	126	12	26	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	c0002	1809	46	1	18	19	4	4	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	c0003	1809	13	10	1	0	0	2	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	c0004	1809	8	8	0	0	0	0	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	c0005	1809	8	1	0	7	0	0	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	c0006	1809	1	0	0	1	0	0	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	c0007	1809	1	1	0	0	0	0	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	c0008	1809	1	0	0	1	0	0	copy fasta	GLS2	chr12	56465952	56493161
GLS_chr2_190875821_190970552	1/1	c0001	2010	346	78	63	159	16	28	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0002	2010	12	0	1	11	0	0	copy fasta	GLS	chr2	190875821	190970552