JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLS_chr2_190875821_190970552	0/0	c0003	2010	6	0	0	6	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0004	2010	4	4	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0005	2010	2	0	0	0	0	2	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0006	2010	2	0	2	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0007	2010	2	0	0	0	0	2	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0008	2010	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0009	2010	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0010	2010	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0011	2010	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0012	2010	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	c0013	2010	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLT1D1_chr12_128848478_128989968	1/1	c0001	1041	186	34	36	78	12	24	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0002	1041	81	21	20	24	2	14	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0003	1041	13	12	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0004	1041	8	0	0	8	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0005	1041	7	7	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0006	1041	5	0	0	5	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0007	1041	4	4	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0008	1041	3	3	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0009	1041	2	1	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0010	1041	2	0	0	2	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0011	1041	1	1	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0012	1041	1	0	0	1	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0013	1041	1	0	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0014	1041	1	1	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0015	1041	1	0	0	1	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0016	1041	1	0	0	1	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0017	1041	1	0	0	1	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0018	1041	1	0	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	c0019	1041	1	0	0	1	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT6D1_chr9_135618648_135644540	0/1	c0001	831	264	54	46	119	12	32	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0002	831	45	5	11	29	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0003	830	44	3	9	28	0	4	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0004	830	25	0	9	11	0	5	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	1/0	c0005	831	11	9	0	1	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0006	831	8	4	1	3	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0007	830	7	0	1	0	2	4	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0008	831	6	6	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0009	831	6	3	2	0	0	1	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0010	830	5	0	0	5	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0011	831	3	3	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0012	830	2	0	0	2	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0013	830	2	1	1	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0014	830	1	0	0	1	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0015	831	1	0	1	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0016	831	1	1	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0017	831	1	1	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0018	831	1	0	1	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0019	831	1	0	0	1	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	c0020	831	1	1	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540