JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLT6D1_chr9_135618648_135644540	0/0	c0021	830	1	1	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT8D1_chr3_52689486_52710791	1/1	c0001	1116	374	95	71	151	16	39	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	c0002	1116	16	0	3	13	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	c0003	1116	2	2	0	0	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	c0004	1116	1	0	0	0	0	1	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	c0005	1116	1	1	0	0	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D2_chr12_103983987_104055187	1/1	c0001	1050	276	72	56	93	14	39	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	c0002	1050	71	4	6	51	0	10	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	c0003	1050	62	18	5	38	1	0	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	c0004	1050	3	0	1	1	1	0	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	c0005	1050	1	1	0	0	0	0	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	c0006	1050	1	0	0	0	0	1	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	c0007	1050	1	0	0	1	0	0	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	c0008	1050	1	1	0	0	0	0	copy fasta	GLT8D2	chr12	103983987	104055187
GLTPD2_chr17_4783964_4795589	0/0	c0001	876	240	77	39	111	5	8	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0002	876	149	5	15	101	6	22	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/1	c0003	876	54	4	30	3	5	11	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0004	876	4	0	0	0	2	2	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0005	876	2	2	0	0	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0006	876	2	0	0	2	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0007	876	2	2	0	0	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	1/0	c0008	876	2	1	0	0	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0009	876	1	0	0	0	0	1	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0010	876	1	1	0	0	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0011	876	1	1	0	0	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0012	876	1	1	0	0	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	c0013	876	1	0	0	1	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTP_chr12_109845945_109885541	1/1	c0001	630	316	89	66	115	14	30	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	c0002	630	4	0	0	0	2	2	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	c0003	630	1	0	0	1	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	c0004	630	1	1	0	0	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLUD1_chr10_87045202_87099843	1/1	c0001	1677	251	73	68	73	8	27	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	c0002	1677	66	0	9	51	0	6	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	c0003	1677	10	10	0	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	c0004	1677	2	1	1	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	c0005	1677	1	0	0	0	0	1	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	c0006	1677	1	1	0	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	c0007	1677	1	0	0	1	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	c0008	1677	1	1	0	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	c0009	1735	1	0	0	1	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD2_chrX_121042610_121055094	1/1	c0001	1677	288	64	51	137	10	24	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	c0002	1677	10	5	1	1	1	2	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	c0003	1677	8	6	2	0	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	c0004	1677	2	2	0	0	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	c0005	1677	2	0	0	2	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	c0006	1678	1	0	0	1	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	c0007	1677	1	0	0	1	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	c0008	1677	1	1	0	0	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	c0009	1677	1	0	0	0	0	1	copy fasta	GLUD2	chrX	121042610	121055094
GLUL_chr1_182373098_182396790	0/0	c0001	1122	277	68	39	132	8	30	copy fasta	GLUL	chr1	182373098	182396790