Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AHNAK2_chr14_104932253_104983374	0/0	c0195	17883	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0196	17388	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0197	17883	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0198	17883	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0199	17883	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0200	17883	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0201	17883	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0202	16893	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0203	14418	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0204	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0205	14934	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0206	17883	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0207	16893	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0208	15408	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0209	15408	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0210	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0211	15408	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0212	13923	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0213	14913	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0214	13923	1	0	0	0	1	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0215	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0216	15408	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0217	15408	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0218	14913	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0219	15408	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0220	15408	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0221	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0222	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0223	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0224	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0225	19368	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0226	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0227	15408	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0228	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0229	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0230	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0231	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0232	15408	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0233	15408	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0234	15408	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0235	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0236	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0237	16893	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0238	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0239	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0240	17883	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0241	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0242	16398	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0243	17388	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0244	15408	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374