JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GLUL_chr1_182373098_182396790	1/1	c0002	1122	116	16	32	46	6	14	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	c0003	1122	3	3	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	c0004	1122	2	2	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	c0005	1122	1	0	1	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	c0006	1122	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLYATL1B_chr11_59081307_59099786	1/1	c0001	909	344	80	58	170	10	24	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0002	909	74	4	24	32	4	10	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0003	909	3	3	0	0	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0004	909	3	0	1	0	0	2	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0005	909	3	0	3	0	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0006	909	2	0	0	2	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0007	909	2	0	0	0	0	2	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0008	909	1	0	0	0	1	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0009	909	1	1	0	0	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0010	909	1	0	0	1	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0011	909	1	0	0	1	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	c0012	909	1	0	0	0	1	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1_chr11_58934488_58961406	1/1	c0001	909	413	89	76	195	10	41	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	c0002	909	4	4	0	0	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	c0003	909	3	0	0	0	0	3	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	c0004	909	2	0	0	2	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	c0005	909	1	1	0	0	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	c0006	909	1	0	0	1	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL2_chr11_58829065_58849704	1/1	c0001	885	202	64	35	73	5	23	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0002	885	163	20	25	101	1	16	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0003	885	3	3	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0004	885	2	2	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0005	885	2	0	1	0	0	1	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0006	885	1	0	0	1	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0007	885	1	0	1	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0008	885	1	1	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0009	885	1	1	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0010	885	1	0	1	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0011	885	1	1	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0012	885	1	0	0	1	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	c0013	885	1	0	1	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL3_chr6_49494923_49533078	0/0	c0001	867	90	0	22	62	1	5	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	1/0	c0002	867	86	48	13	16	1	7	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0003	867	81	15	9	39	8	10	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/1	c0004	867	61	1	13	31	5	10	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0005	867	16	13	2	0	0	1	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0006	867	14	0	0	13	0	1	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0007	867	11	10	0	1	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0008	867	4	4	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0009	867	3	0	2	0	1	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0010	867	2	0	0	2	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0011	867	2	2	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0012	867	2	0	0	2	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0013	867	1	0	1	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	c0014	867	1	0	0	1	0	0	copy fasta	GLYATL3	chr6	49494923	49533078