JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GM2A_chr5_151248185_151275440	0/0	c0010	582	2	2	0	0	0	0	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	c0011	582	1	0	0	1	0	0	copy fasta	GM2A	chr5	151248185	151275440
GMCL1_chr2_69824660_69886384	1/1	c0001	1548	327	75	42	160	14	34	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0002	1548	50	10	22	18	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0003	1548	3	3	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0004	1548	2	2	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0005	1548	1	0	1	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0006	1548	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0007	1548	1	0	1	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0008	1548	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0009	1548	1	0	0	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0010	1548	1	0	0	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0011	1548	1	0	0	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	c0012	1548	1	0	0	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL2_chr5_178179505_178192371	0/0	c0001	1581	134	22	16	87	0	9	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0002	1581	117	17	39	30	8	23	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0003	1581	76	1	13	51	1	10	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/1	c0004	1581	41	14	7	13	2	4	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	1/0	c0005	1581	26	22	2	0	1	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0006	1581	24	5	1	14	1	3	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0007	1581	8	7	0	0	1	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0008	1581	5	0	0	5	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0009	1581	4	2	2	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0010	1581	3	3	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0011	1581	3	2	1	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0012	1581	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0013	1581	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0014	1581	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0015	1581	1	0	0	1	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0016	1581	1	0	0	1	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0017	1581	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0018	1581	1	0	1	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0019	1581	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0020	1581	1	0	0	0	1	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0021	1581	1	0	0	0	0	1	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	c0022	1581	1	0	0	0	1	0	copy fasta	GMCL2	chr5	178179505	178192371
GMDS_chr6_1618806_2250605	1/0	c0001	1119	88	48	13	16	4	6	copy fasta	GMDS	chr6	1618806	2250605
GMDS_chr6_1618806_2250605	0/1	c0002	1119	76	19	13	31	2	10	copy fasta	GMDS	chr6	1618806	2250605
GMDS_chr6_1618806_2250605	0/0	c0003	1119	1	1	0	0	0	0	copy fasta	GMDS	chr6	1618806	2250605
GMDS_chr6_1618806_2250605	0/0	c0004	1119	1	0	0	1	0	0	copy fasta	GMDS	chr6	1618806	2250605
GMEB1_chr1_28663784_28724353	1/1	c0001	1692	279	84	61	84	17	31	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	c0002	1692	3	2	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	c0003	1692	2	2	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	c0004	1692	2	0	1	0	0	1	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	c0005	1692	2	2	0	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	c0006	1692	1	0	1	0	0	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	c0007	1692	1	0	0	0	1	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB2_chr20_63582605_63632101	0/0	c0001	1593	104	34	30	14	8	18	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0002	1593	85	21	16	45	0	3	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0003	1593	80	0	13	54	4	9	copy fasta	GMEB2	chr20	63582605	63632101