JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GMEB2_chr20_63582605_63632101	1/0	c0004	1593	23	19	1	0	0	2	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/1	c0005	1593	21	9	8	0	3	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0006	1593	4	0	0	0	0	4	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0007	1593	4	3	1	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0008	1593	2	0	0	0	0	2	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0009	1593	1	0	0	1	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0010	1593	1	1	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0011	1593	1	0	0	0	0	1	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0012	1593	1	0	1	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0013	1593	1	0	0	0	1	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0014	1593	1	1	0	0	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	c0015	1593	1	0	0	0	0	1	copy fasta	GMEB2	chr20	63582605	63632101
GMFB_chr14_54469485_54493980	1/1	c0001	429	352	91	56	159	10	34	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	c0002	429	1	1	0	0	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	c0003	429	1	0	0	1	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFG_chr19_39323359_39341043	1/1	c0001	429	364	83	72	157	12	38	copy fasta	GMFG	chr19	39323359	39341043
GMFG_chr19_39323359_39341043	0/0	c0002	429	7	0	0	7	0	0	copy fasta	GMFG	chr19	39323359	39341043
GMFG_chr19_39323359_39341043	0/0	c0003	429	2	2	0	0	0	0	copy fasta	GMFG	chr19	39323359	39341043
GMFG_chr19_39323359_39341043	0/0	c0004	429	1	1	0	0	0	0	copy fasta	GMFG	chr19	39323359	39341043
GMIP_chr19_19624476_19648657	1/1	c0001	2913	339	80	70	135	15	37	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0002	2914	16	1	4	8	0	3	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0003	2913	15	1	6	5	0	3	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0004	2914	10	3	2	5	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0005	2913	7	0	0	7	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0006	2913	3	3	0	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0007	2913	3	3	0	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0008	2914	2	0	0	2	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0009	2915	2	0	0	2	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0010	2913	2	0	1	0	0	1	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0011	2913	2	2	0	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0012	2913	2	2	0	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0013	2913	2	0	0	0	0	2	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0014	2913	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0015	2913	1	0	0	0	0	1	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0016	2914	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0017	2913	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0018	2913	1	1	0	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0019	2913	1	0	0	0	1	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0020	2913	1	0	0	0	0	1	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0021	2913	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0022	2913	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0023	2913	1	0	1	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	c0024	2913	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GML_chr8_142829801_142851851	1/1	c0001	477	304	64	56	130	12	40	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	c0002	477	109	21	11	71	0	6	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	c0003	477	3	3	0	0	0	0	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	c0004	477	2	1	1	0	0	0	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	c0005	477	1	0	0	1	0	0	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	c0006	477	1	1	0	0	0	0	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	c0007	477	1	0	0	0	0	1	copy fasta	GML	chr8	142829801	142851851