JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GML_chr8_142829801_142851851	0/0	c0008	477	1	0	0	0	0	1	copy fasta	GML	chr8	142829801	142851851
GMNC_chr3_190847737_190867694	1/0	c0001	1005	276	57	54	138	8	18	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/1	c0002	1005	201	40	27	97	9	27	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	c0003	1005	4	0	0	1	0	3	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	c0004	1005	2	1	1	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	c0005	1005	1	1	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	c0006	1005	1	0	0	1	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	c0007	1005	1	1	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	c0008	1005	1	0	0	0	1	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	c0009	1005	1	0	0	1	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNN_chr6_24769937_24791099	1/0	c0001	630	239	55	50	83	14	36	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	c0002	630	132	18	19	88	0	7	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	c0003	630	33	17	3	12	0	1	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/1	c0004	630	4	1	2	0	0	0	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	c0005	630	1	1	0	0	0	0	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	c0006	630	1	0	0	1	0	0	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	c0007	630	1	0	0	1	0	0	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	c0008	630	1	0	0	1	0	0	copy fasta	GMNN	chr6	24769937	24791099
GMPPA_chr2_219493891_219511989	1/1	c0001	1263	343	90	55	140	11	45	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0002	1263	16	1	10	0	5	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0003	1263	7	6	1	0	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0004	1263	3	0	0	3	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0005	1263	2	0	2	0	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0006	1263	2	0	2	0	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0007	1263	2	0	2	0	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0008	1263	1	0	0	0	0	1	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0009	1263	1	0	0	1	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0010	1263	1	1	0	0	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0011	1263	1	0	0	1	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0012	1263	1	0	0	1	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0013	1263	1	0	0	0	1	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	c0014	1263	1	0	0	0	1	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPB_chr3_49714916_49728951	0/1	c0001	1083	320	86	61	128	14	30	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	1/0	c0002	1083	3	2	0	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	c0003	1083	1	0	1	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	c0004	1083	1	1	0	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPPB_chr3_49714916_49728951	0/0	c0005	1083	1	1	0	0	0	0	copy fasta	GMPPB	chr3	49714916	49728951
GMPR2_chr14_24227929_24244242	1/1	c0001	1047	314	78	59	126	14	35	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0002	1047	86	6	2	69	0	9	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0003	1047	7	0	6	0	0	1	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0004	1047	5	0	0	4	0	1	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0005	1047	2	0	1	0	0	1	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0006	1047	1	0	0	0	0	1	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0007	1047	1	1	0	0	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0008	1047	1	1	0	0	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0009	1047	1	0	0	1	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0010	1047	1	1	0	0	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR2_chr14_24227929_24244242	0/0	c0011	1047	1	1	0	0	0	0	copy fasta	GMPR2	chr14	24227929	24244242
GMPR_chr6_16233587_16300549	0/0	c0001	1038	217	53	38	90	2	34	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	1/0	c0002	1038	72	6	34	20	4	7	copy fasta	GMPR	chr6	16233587	16300549