JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GMPR_chr6_16233587_16300549	0/1	c0003	1038	37	19	1	13	0	3	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0004	1038	6	5	1	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0005	1042	4	0	0	4	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0006	1038	1	1	0	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0007	1038	1	0	0	1	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0008	1038	1	0	0	1	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0009	1038	1	1	0	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0010	1038	1	0	0	1	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0011	1042	1	0	0	1	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0012	1038	1	1	0	0	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPR_chr6_16233587_16300549	0/0	c0013	1038	1	0	0	1	0	0	copy fasta	GMPR	chr6	16233587	16300549
GMPS_chr3_155865650_155949020	1/1	c0001	2082	326	80	71	120	12	41	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0002	2082	38	0	5	28	2	3	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0003	2082	5	5	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0004	2082	3	3	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0005	2082	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0006	2082	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0007	2082	1	0	0	1	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0008	2082	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0009	2082	1	1	0	0	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0010	2082	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0011	2082	1	0	0	1	0	0	copy fasta	GMPS	chr3	155865650	155949020
GMPS_chr3_155865650_155949020	0/0	c0012	1900	1	0	0	0	0	1	copy fasta	GMPS	chr3	155865650	155949020
GNA11_chr19_3089362_3128999	1/0	c0001	1080	266	81	42	108	12	22	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	c0002	1080	149	12	32	77	5	23	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	c0003	1080	3	3	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	c0004	1080	2	0	2	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	c0005	1080	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	c0006	1080	1	0	0	1	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	c0007	1080	1	1	0	0	0	0	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	c0008	1080	1	0	0	0	0	1	copy fasta	GNA11	chr19	3089362	3128999
GNA11_chr19_3089362_3128999	0/0	c0009	1080	1	0	0	0	1	0	copy fasta	GNA11	chr19	3089362	3128999
GNA12_chr7_2723105_2849308	1/1	c0001	1146	298	71	54	118	13	40	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	c0002	1146	11	11	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	c0003	1146	5	0	0	5	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	c0004	1146	5	3	1	0	1	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	c0005	1146	1	0	0	1	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	c0006	1146	1	1	0	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA12_chr7_2723105_2849308	0/0	c0007	1146	1	0	1	0	0	0	copy fasta	GNA12	chr7	2723105	2849308
GNA13_chr17_65004289_65061740	1/1	c0001	1134	159	76	29	26	2	24	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	c0002	1134	11	10	1	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	c0003	1134	3	0	3	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	c0004	1134	2	0	2	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	c0005	1134	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	c0006	1134	1	1	0	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	c0007	1134	1	0	1	0	0	0	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	c0008	1134	1	0	0	0	0	1	copy fasta	GNA13	chr17	65004289	65061740
GNA13_chr17_65004289_65061740	0/0	c0009	1134	1	0	0	0	0	1	copy fasta	GNA13	chr17	65004289	65061740
GNA14_chr9_77418079_77653322	1/0	c0001	1068	114	28	31	44	1	9	copy fasta	GNA14	chr9	77418079	77653322
GNA14_chr9_77418079_77653322	0/1	c0002	1068	80	27	18	29	1	4	copy fasta	GNA14	chr9	77418079	77653322