JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GNAL_chr18_11684264_11890685	1/1	c0001	1377	211	73	27	78	6	25	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	c0002	1383	21	7	6	4	0	4	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	c0003	1383	8	8	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	c0004	1371	6	6	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	c0005	1377	1	0	0	0	0	1	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	c0006	1383	1	0	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11747085_11890685	1/1	c0001	1146	275	91	36	105	8	33	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	c0002	1146	4	0	0	4	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	c0003	1146	3	3	0	0	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	c0004	1146	1	0	0	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	c0005	1146	1	0	0	0	0	1	copy fasta	GNAL	chr18	11747085	11890685
GNAO1_chr16_56186489_56362444	0/0	c0001	1065	164	24	28	89	9	14	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	1/1	c0002	1065	128	43	20	28	9	26	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	c0003	1065	2	0	2	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	c0004	1065	2	2	0	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	c0005	1065	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	c0006	1065	1	1	0	0	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAQ_chr9_77711097_78036811	1/1	c0001	1080	281	78	54	111	6	30	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	c0002	1080	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAS_chr20_58834748_58916192	1/1	c0001	738	276	78	65	92	13	26	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	c0002	738	14	9	3	0	0	2	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	c0003	738	6	5	1	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	c0004	738	2	0	0	2	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	c0005	738	2	0	1	0	1	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	c0006	738	1	0	0	1	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	c0007	738	1	0	0	1	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58847716_58916192	0/0	c0001	3114	118	25	33	42	7	11	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	1/1	c0002	3114	100	9	18	52	6	13	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0003	3150	17	11	3	2	0	1	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0004	3114	13	12	1	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0005	3114	6	1	4	0	0	1	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0006	3114	5	5	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0007	3150	4	2	2	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0008	3114	4	1	2	0	1	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0009	3150	3	2	1	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0010	3150	3	3	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0011	3150	3	3	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0012	3150	2	2	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0013	3114	2	2	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0014	3114	2	2	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0015	3123	2	2	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0016	3114	2	0	2	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0017	3114	1	0	0	1	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0018	3150	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0019	3150	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0020	3114	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0021	3150	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0022	3114	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0023	3114	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0024	3114	1	0	0	0	0	1	copy fasta	GNAS	chr20	58847716	58916192