JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GNAS_chr20_58847716_58916192	0/0	c0025	3114	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0026	3087	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0027	3123	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0028	3123	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0029	3114	1	0	0	0	0	1	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0030	3114	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0031	3150	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	c0032	3114	1	0	0	1	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58886421_58916192	0/0	c0001	1185	236	48	50	108	8	22	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	1/1	c0002	1185	155	13	26	88	7	19	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	c0003	1185	20	18	1	0	0	1	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	c0004	1185	7	3	3	0	1	0	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	c0005	1185	7	7	0	0	0	0	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	c0006	1185	3	3	0	0	0	0	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	c0007	1185	2	2	0	0	0	0	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	c0008	1185	1	1	0	0	0	0	copy fasta	GNAS	chr20	58886421	58916192
GNAS_chr20_58886421_58916192	0/0	c0009	1185	1	1	0	0	0	0	copy fasta	GNAS	chr20	58886421	58916192
GNAT1_chr3_50186610_50202696	1/1	c0001	1053	340	84	66	135	16	37	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	c0002	1053	14	0	2	11	0	1	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	c0003	1053	8	8	0	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	c0004	1053	2	0	0	2	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	c0005	1053	1	1	0	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	c0006	1053	1	1	0	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT2_chr1_109598091_109624616	1/1	c0001	1065	168	86	32	18	7	23	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	c0002	1065	118	6	19	75	4	14	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	c0003	1065	49	0	1	44	0	4	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	c0004	1065	5	0	0	5	0	0	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	c0005	1065	2	0	0	2	0	0	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	c0006	1065	1	0	0	0	0	1	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	c0007	1065	1	0	0	0	1	0	copy fasta	GNAT2	chr1	109598091	109624616
GNAT3_chr7_80453635_80517064	0/0	c0001	1065	180	40	25	95	3	17	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	1/1	c0002	1065	147	48	37	33	10	17	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	c0003	1065	2	2	0	0	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	c0004	1065	1	0	0	1	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	c0005	1065	1	1	0	0	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	c0006	1065	1	0	0	0	1	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	c0007	1065	1	1	0	0	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	c0008	1065	1	0	0	1	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAZ_chr22_23065519_23130032	1/1	c0001	1068	226	79	39	71	8	27	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0002	1068	93	8	17	49	6	13	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0003	1068	3	0	3	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0004	1068	2	2	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0005	1068	2	0	1	0	0	1	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0006	1068	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0007	1068	1	0	0	1	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0008	1068	1	0	1	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0009	1068	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0010	1068	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0011	1068	1	1	0	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	c0012	1068	1	0	1	0	0	0	copy fasta	GNAZ	chr22	23065519	23130032