JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GNAZ_chr22_23065519_23130032	0/0	c0013	1068	1	0	0	0	0	1	copy fasta	GNAZ	chr22	23065519	23130032
GNB1L_chr22_19778223_19859874	1/0	c0001	984	171	65	32	52	7	14	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0002	984	75	2	9	56	4	4	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0003	984	34	1	14	8	2	9	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0004	984	12	0	0	10	0	2	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0005	984	6	6	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0006	984	6	0	1	1	0	4	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0007	984	4	0	2	2	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0008	984	4	4	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0009	984	2	2	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0010	984	2	0	0	0	1	1	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0011	984	2	2	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/1	c0012	984	2	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0013	984	1	0	0	0	0	1	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0014	984	1	0	0	0	0	1	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0015	984	1	0	0	1	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0016	984	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0017	984	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	c0018	984	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1_chr1_1780286_1896087	1/1	c0001	1023	330	86	47	145	14	36	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	c0002	1023	5	4	1	0	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB1_chr1_1780286_1896087	0/0	c0003	1023	1	0	0	1	0	0	copy fasta	GNB1	chr1	1780286	1896087
GNB2_chr7_100668740_100684169	1/1	c0001	1023	347	85	61	139	12	48	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	c0002	1023	14	0	0	14	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	c0003	1023	3	3	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	c0004	1023	3	0	0	3	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	c0005	1023	3	3	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	c0006	1023	1	1	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	c0007	1023	1	0	1	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	c0008	1023	1	0	0	1	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	c0009	1023	1	0	0	1	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB3_chr12_6835925_6852393	0/1	c0001	1023	207	67	21	98	3	17	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	1/0	c0002	1023	190	23	42	87	9	28	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	c0003	1023	11	0	7	0	3	1	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	c0004	1023	6	0	4	2	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	c0005	1023	2	0	2	0	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	c0006	1023	1	0	0	1	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	c0007	1023	1	1	0	0	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	c0008	1023	1	0	0	1	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	c0009	1023	1	0	0	0	1	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	c0010	1023	1	1	0	0	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	c0011	1023	1	0	0	1	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB4_chr3_179391088_179456470	1/1	c0001	1023	199	42	36	98	1	20	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	c0002	1023	190	48	38	71	9	24	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	c0003	1023	8	2	4	0	0	2	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	c0004	1023	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	c0005	1006	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	c0006	1023	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB5_chr15_52110100_52196392	1/1	c0001	1188	296	47	60	144	10	33	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	c0002	1188	37	21	6	9	0	1	copy fasta	GNB5	chr15	52110100	52196392