Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AHNAK2_chr14_104932253_104983374	0/0	c0245	14934	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0246	17883	1	0	0	0	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0247	17883	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	c0248	15408	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK_chr11_62510902_62551806	0/0	c0001	17673	30	15	2	12	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0002	17673	30	9	7	3	3	8	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0003	17676	12	6	3	2	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0004	17676	10	10	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0005	17673	7	0	1	6	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0006	17673	7	5	2	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0007	17673	6	0	1	5	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0008	17673	6	0	0	6	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0009	17673	5	5	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0010	17673	5	0	0	4	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0011	17676	4	4	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0012	17676	4	4	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0013	17673	3	0	0	3	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0014	17673	3	0	3	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0015	17673	3	0	2	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0016	17673	2	2	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0017	17673	2	2	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0018	17673	2	2	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0019	17673	2	0	0	0	0	2	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0020	17673	2	0	2	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0021	17673	2	2	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0022	17673	2	0	2	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0023	17676	2	2	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0024	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0025	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0026	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0027	17673	1	0	0	0	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0028	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0029	17673	1	0	1	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0030	17673	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0031	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0032	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0033	17673	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0034	17673	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0035	17673	1	0	0	0	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0036	17673	1	0	1	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0037	17673	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	1/0	c0038	17673	1	0	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0039	17673	1	0	0	0	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0040	17673	1	0	0	0	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/1	c0041	17673	1	0	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0042	17673	1	0	0	0	1	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0043	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0044	17673	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0045	17472	1	0	1	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0046	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806