JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GNB5_chr15_52110100_52196392	0/0	c0003	1188	14	14	0	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	c0004	1188	9	0	7	0	0	2	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	c0005	1188	3	2	1	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	c0006	1188	2	2	0	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	c0007	1188	2	2	0	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	c0008	1188	1	0	0	1	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	c0009	1188	1	0	0	1	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	c0010	1188	1	0	0	1	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNE_chr9_36209441_36263448	1/1	c0001	2169	364	82	72	152	16	40	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	c0002	2169	8	6	0	0	0	2	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	c0003	2169	2	0	0	2	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36281978	1/1	c0001	2262	346	78	72	138	16	40	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	c0002	2262	8	6	0	0	0	2	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	c0003	2262	2	0	0	2	0	0	copy fasta	GNE	chr9	36209441	36281978
GNG10_chr9_111656605_111675226	1/1	c0001	207	421	96	82	179	16	46	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	c0002	207	9	0	0	7	0	2	copy fasta	GNG10	chr9	111656605	111675226
GNG11_chr7_93916735_93933610	1/1	c0001	222	437	95	76	198	18	48	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	c0002	222	1	1	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG12_chr1_67696475_67838467	1/1	c0001	219	267	76	44	116	13	16	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	c0002	219	6	6	0	0	0	0	copy fasta	GNG12	chr1	67696475	67838467
GNG12_chr1_67696475_67838467	0/0	c0003	219	1	0	0	0	1	0	copy fasta	GNG12	chr1	67696475	67838467
GNG13_chr16_793041_805734	1/1	c0001	204	383	81	78	164	18	40	copy fasta	GNG13	chr16	793041	805734
GNG13_chr16_793041_805734	0/0	c0002	204	39	9	4	18	0	8	copy fasta	GNG13	chr16	793041	805734
GNG14_chr19_12682998_12693422	1/1	c0001	324	336	67	64	146	18	39	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	c0002	324	13	13	0	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	c0003	324	10	10	0	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	c0004	324	5	0	5	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	c0005	324	2	0	0	0	0	2	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	c0006	324	1	0	1	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	c0007	324	1	0	0	0	0	1	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	c0008	324	1	1	0	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	c0009	324	1	1	0	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG2_chr14_51855612_51974795	1/1	c0001	216	374	92	55	168	16	41	copy fasta	GNG2	chr14	51855612	51974795
GNG2_chr14_51855612_51974795	0/0	c0002	216	6	2	1	2	0	1	copy fasta	GNG2	chr14	51855612	51974795
GNG3_chr11_62702676_62714201	1/1	c0001	228	361	90	52	166	12	39	copy fasta	GNG3	chr11	62702676	62714201
GNG3_chr11_62702676_62714201	0/0	c0002	228	1	0	0	0	0	1	copy fasta	GNG3	chr11	62702676	62714201
GNG4_chr1_235542685_235654784	0/1	c0001	228	204	47	58	74	3	21	copy fasta	GNG4	chr1	235542685	235654784
GNG4_chr1_235542685_235654784	1/0	c0002	228	126	45	24	30	5	21	copy fasta	GNG4	chr1	235542685	235654784
GNG5B_chrX_110341454_110351973	1/1	c0001	207	235	66	37	107	5	18	copy fasta	GNG5B	chrX	110341454	110351973
GNG5B_chrX_110341454_110351973	0/0	c0002	207	1	0	0	1	0	0	copy fasta	GNG5B	chrX	110341454	110351973
GNG5_chr1_84493325_84511581	1/1	c0001	207	364	90	69	153	10	40	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	c0002	207	1	0	0	1	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	c0003	207	1	0	1	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG7_chr19_2506219_2707694	1/1	c0001	207	206	68	48	54	10	24	copy fasta	GNG7	chr19	2506219	2707694
GNG8_chr19_46628953_46641202	1/1	c0001	213	352	70	63	181	4	32	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	0/0	c0002	213	83	28	19	17	10	9	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	0/0	c0003	213	1	0	0	1	0	0	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	0/0	c0004	213	1	0	0	0	0	1	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	0/0	c0005	213	1	0	0	1	0	0	copy fasta	GNG8	chr19	46628953	46641202
GNGT1_chr7_93901567_93916265	1/1	c0001	225	404	76	74	188	18	46	copy fasta	GNGT1	chr7	93901567	93916265