JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GNGT1_chr7_93901567_93916265	0/0	c0002	225	20	17	3	0	0	0	copy fasta	GNGT1	chr7	93901567	93916265
GNGT1_chr7_93901567_93916265	0/0	c0003	225	6	1	3	0	0	2	copy fasta	GNGT1	chr7	93901567	93916265
GNGT2_chr17_49201237_49215574	1/1	c0001	210	428	88	74	198	16	50	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	c0002	210	7	6	1	0	0	0	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	c0003	210	5	0	3	0	2	0	copy fasta	GNGT2	chr17	49201237	49215574
GNL1_chr6_30536381_30561489	0/1	c0001	1824	241	60	35	107	7	31	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	c0002	1824	142	23	32	77	3	7	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	c0003	1824	6	1	4	0	1	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	c0004	1824	2	2	0	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	c0005	1824	2	0	1	0	0	1	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	c0006	1824	1	0	1	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	c0007	1824	1	0	1	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	c0008	1824	1	0	0	0	1	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	c0009	1824	1	0	0	0	0	1	copy fasta	GNL1	chr6	30536381	30561489
GNL2_chr1_37561816_37600937	1/1	c0001	2196	369	79	66	159	17	46	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	c0002	2196	1	0	1	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	c0003	2196	1	1	0	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	c0004	2196	1	0	1	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	c0005	2196	1	1	0	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	c0006	2196	1	1	0	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	c0007	2196	1	0	0	1	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	c0008	2196	1	0	0	0	1	0	copy fasta	GNL2	chr1	37561816	37600937
GNL3L_chrX_54525219_54572289	1/1	c0001	1749	272	67	49	121	11	22	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	c0002	1748	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	c0003	1749	1	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	c0004	1749	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	c0005	1749	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	c0006	1749	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3_chr3_52681032_52699497	1/1	c0001	1650	197	34	41	82	11	27	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0002	1650	123	8	25	80	4	6	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0003	1650	23	23	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0004	1650	20	14	3	0	1	2	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0005	1647	8	6	2	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0006	1650	3	0	0	3	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0007	1650	3	0	0	2	0	1	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0008	1650	3	2	1	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0009	1650	2	1	1	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0010	1650	1	0	0	1	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0011	1650	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0012	1650	1	0	0	1	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0013	1650	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0014	1650	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0015	1650	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0016	1650	1	0	0	1	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0017	1650	1	0	0	0	0	1	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0018	1650	1	0	1	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0019	1650	1	0	0	0	0	1	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0020	1650	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	c0021	1650	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNLY_chr2_85689358_85703852	1/0	c0001	438	235	71	45	82	10	26	copy fasta	GNLY	chr2	85689358	85703852