JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GNLY_chr2_85689358_85703852	0/1	c0002	438	141	5	30	82	4	19	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	c0003	438	8	6	2	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	c0004	438	7	7	0	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	c0005	438	2	1	1	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	c0006	438	2	2	0	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	c0007	438	1	0	0	0	0	1	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	c0008	438	1	1	0	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	c0009	438	1	1	0	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNMT_chr6_42955754_42968880	1/1	c0001	888	380	93	74	160	10	41	copy fasta	GNMT	chr6	42955754	42968880
GNMT_chr6_42955754_42968880	0/0	c0002	888	6	6	0	0	0	0	copy fasta	GNMT	chr6	42955754	42968880
GNMT_chr6_42955754_42968880	0/0	c0003	888	1	0	0	0	0	1	copy fasta	GNMT	chr6	42955754	42968880
GNMT_chr6_42955754_42968880	0/0	c0004	888	1	1	0	0	0	0	copy fasta	GNMT	chr6	42955754	42968880
GNPAT_chr1_231236212_231282973	0/0	c0001	2043	181	48	23	87	5	18	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	1/1	c0002	2043	114	14	21	60	6	11	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	c0003	2043	46	7	12	21	3	3	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	c0004	2043	6	6	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	c0005	2043	4	4	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	c0006	2043	4	4	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	c0007	2043	2	0	0	0	0	2	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	c0008	2043	1	1	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	c0009	2043	1	1	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	c0010	2043	1	1	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPDA1_chr5_141995671_142018027	0/0	c0001	870	219	56	31	107	4	21	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	1/0	c0002	870	197	32	51	76	10	27	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	c0003	870	2	2	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	c0004	870	2	2	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	c0005	883	1	0	0	1	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	c0006	870	1	0	0	1	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	c0007	870	1	0	0	1	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA2_chr4_44696795_44731556	1/1	c0001	831	407	96	74	196	9	30	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	c0002	831	5	0	2	0	1	2	copy fasta	GNPDA2	chr4	44696795	44731556
GNPNAT1_chr14_52770193_52796607	1/1	c0001	555	384	80	77	178	12	35	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	c0002	555	4	0	0	4	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	c0003	555	1	0	1	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	c0004	555	1	0	0	0	0	1	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPTAB_chr12_101740499_101835959	0/0	c0001	3771	198	32	22	120	6	18	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	1/1	c0002	3771	87	27	23	23	4	8	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0003	3771	50	0	9	39	1	1	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0004	3771	7	5	2	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0005	3771	7	7	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0006	3771	6	5	1	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0007	3771	6	6	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0008	3771	6	0	0	6	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0009	3771	5	5	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0010	3771	2	0	2	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0011	3771	2	2	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0012	3771	2	0	1	0	1	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0013	3771	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0014	3771	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0015	3771	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959