JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GNPTAB_chr12_101740499_101835959	0/0	c0016	3771	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0017	3771	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0018	3771	1	0	1	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0019	3771	1	0	1	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0020	3771	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0021	3771	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0022	3771	1	0	0	0	0	1	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0023	3771	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0024	3771	1	0	0	0	0	1	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0025	3771	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	c0026	3771	1	0	0	0	0	1	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTG_chr16_1346931_1369113	1/1	c0001	918	360	82	71	143	17	45	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0002	918	3	3	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0003	918	2	0	0	2	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0004	918	2	2	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0005	918	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0006	918	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0007	178	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0008	918	1	0	0	0	1	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0009	918	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0010	918	1	0	1	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0011	918	1	0	0	0	0	1	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0012	918	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0013	918	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0014	918	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	c0015	918	1	0	0	1	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNRH1_chr8_25414258_25429261	1/0	c0001	279	286	81	56	96	12	40	copy fasta	GNRH1	chr8	25414258	25429261
GNRH1_chr8_25414258_25429261	0/1	c0002	279	104	2	11	84	2	4	copy fasta	GNRH1	chr8	25414258	25429261
GNRH1_chr8_25414258_25429261	0/0	c0003	279	4	4	0	0	0	0	copy fasta	GNRH1	chr8	25414258	25429261
GNRH1_chr8_25414258_25429261	0/0	c0004	279	3	3	0	0	0	0	copy fasta	GNRH1	chr8	25414258	25429261
GNRH1_chr8_25414258_25429261	0/0	c0005	279	1	0	1	0	0	0	copy fasta	GNRH1	chr8	25414258	25429261
GNRH2_chr20_3038622_3050747	1/1	c0001	342	331	82	53	145	15	34	copy fasta	GNRH2	chr20	3038622	3050747
GNRH2_chr20_3038622_3050747	0/0	c0002	347	101	5	17	60	3	16	copy fasta	GNRH2	chr20	3038622	3050747
GNRH2_chr20_3038622_3050747	0/0	c0003	342	7	5	2	0	0	0	copy fasta	GNRH2	chr20	3038622	3050747
GNRH2_chr20_3038622_3050747	0/0	c0004	342	6	6	0	0	0	0	copy fasta	GNRH2	chr20	3038622	3050747
GNRH2_chr20_3038622_3050747	0/0	c0005	342	1	0	0	1	0	0	copy fasta	GNRH2	chr20	3038622	3050747
GNRHR_chr4_67732118_67759388	1/1	c0001	987	362	81	70	161	16	32	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	c0002	987	18	8	6	1	1	2	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	c0003	987	4	4	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	c0004	987	2	0	0	2	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	c0005	987	1	0	0	0	1	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	c0006	1045	1	1	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNS_chr12_64708449_64764406	0/1	c0001	1659	243	67	37	101	9	28	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	1/0	c0002	1659	75	6	14	36	5	13	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	c0003	1659	13	0	12	0	0	1	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	c0004	1659	10	10	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	c0005	1659	7	7	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	c0006	1659	2	2	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	c0007	1659	1	0	1	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	c0008	1659	1	0	0	1	0	0	copy fasta	GNS	chr12	64708449	64764406