JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA1_chr9_124873275_124946083	0/0	c0001	2304	173	33	44	67	10	19	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/1	c0002	2304	103	18	14	60	4	6	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0003	2304	59	7	1	44	0	7	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0004	2304	11	9	2	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0005	2304	8	8	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0006	2304	5	4	1	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	1/0	c0007	2304	5	3	1	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0008	2304	1	0	1	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0009	2304	1	0	0	1	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0010	2304	1	0	0	1	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0011	2304	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0012	2304	1	0	0	0	0	1	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0013	2304	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0014	2304	1	0	0	1	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0015	2304	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0016	2304	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	c0017	2304	1	0	0	0	0	1	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA2_chr9_128250829_128281007	1/1	c0001	3090	200	23	34	102	10	29	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0002	3087	57	0	10	39	0	8	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0003	3087	24	0	0	21	0	3	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0004	3090	16	0	0	16	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0005	3087	16	16	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0006	3084	13	13	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0007	3087	13	10	3	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0008	3084	6	6	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0009	3090	4	4	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0010	3087	4	2	2	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0011	3090	4	3	1	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0012	3090	3	0	0	3	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0013	3090	3	0	0	3	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0014	3084	3	3	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0015	3090	2	0	0	2	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0016	3090	2	0	1	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0017	3087	2	2	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0018	3090	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0019	3090	1	0	0	0	0	1	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0020	3090	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0021	3087	1	1	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0022	3087	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0023	3090	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0024	3090	1	0	1	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0025	3090	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0026	3090	1	0	0	0	1	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0027	3090	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0028	3087	1	0	0	0	1	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0029	3087	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0030	3087	1	1	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0031	3090	1	1	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0032	3090	1	0	0	0	0	1	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	c0033	3087	1	1	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007