JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA3_chr12_132763914_132833869	0/1	c0001	4497	96	22	17	45	4	7	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0002	4497	65	14	15	25	0	11	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	1/0	c0003	4497	36	13	6	13	0	3	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0004	4497	18	0	2	10	1	5	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0005	4497	14	1	6	3	2	2	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0006	4497	13	13	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0007	4497	9	1	0	8	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0008	4497	8	0	0	8	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0009	4497	7	0	1	1	3	2	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0010	4497	6	5	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0011	4497	2	0	0	2	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0012	4497	2	0	0	0	0	2	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0013	4497	2	1	0	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0014	4497	2	0	0	0	0	2	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0015	4497	2	2	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0016	4497	2	0	0	0	0	2	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0017	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0018	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0019	4497	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0020	4497	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0021	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0022	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0023	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0024	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0025	4497	1	0	0	0	1	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0026	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0027	4497	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0028	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0029	4497	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0030	4497	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0031	4497	1	0	0	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0032	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0033	4497	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0034	4497	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0035	4497	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0036	4497	1	0	0	0	1	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0037	4497	1	0	0	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0038	4497	1	0	0	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0039	4497	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	c0040	4442	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA4_chr3_37238271_37371879	1/1	c0001	6693	146	45	32	46	5	16	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0002	6693	69	8	20	34	2	5	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0003	6693	11	6	5	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0004	6693	6	6	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0005	6693	6	5	1	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0006	6693	6	6	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0007	6693	5	1	0	0	0	4	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0008	6693	5	5	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0009	6693	3	3	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0010	6693	2	0	0	1	0	1	copy fasta	GOLGA4	chr3	37238271	37371879