JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA4_chr3_37238271_37371879	0/0	c0011	6693	2	2	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0012	6693	1	0	0	1	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0013	6693	1	0	0	1	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0014	6693	1	1	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0015	6693	1	0	0	0	1	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0016	6693	1	0	0	0	0	1	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0017	6693	1	0	1	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0018	6693	1	1	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0019	6693	1	0	1	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0020	6693	1	0	0	0	0	1	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0021	6693	1	0	0	1	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	c0022	6693	1	1	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA5_chr14_92789305_92844947	0/0	c0001	2196	216	68	47	68	9	24	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	1/1	c0002	2196	67	4	8	39	4	10	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0003	2196	62	1	17	36	1	7	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0004	2196	15	0	0	12	0	3	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0005	2196	4	0	0	4	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0006	2196	4	0	0	4	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0007	2196	4	0	0	4	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0008	2196	2	0	0	2	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0009	2196	2	0	0	2	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0010	2196	2	0	0	2	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0011	2196	2	2	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0012	2196	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0013	2196	1	0	0	1	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0014	2196	1	0	1	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0015	2196	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0016	2196	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0017	2196	1	0	1	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0018	2196	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0019	2196	1	0	0	1	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0020	2196	1	0	0	1	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	c0021	2196	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA6A_chr15_74064857_74087550	1/0	c0001	2082	35	3	9	16	1	5	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0002	2082	20	0	5	5	7	3	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0003	2082	13	1	0	10	1	1	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0004	2082	11	3	1	5	2	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0005	2082	9	7	2	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0006	2082	4	4	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0007	2082	4	0	2	2	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0008	2082	3	3	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0009	2082	3	3	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0010	2082	2	2	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0011	2082	2	1	1	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0012	2082	2	0	0	0	2	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0013	2082	2	0	1	1	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0014	2082	2	2	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0015	2082	2	1	1	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0016	2082	1	1	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	c0017	2082	1	0	0	1	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550